Heuberger, Adam L, Robison, Faith M., Lyons, Sarah Marie, Broeckling, Corey D, Prenni, Jessica E, Evaluating plant immunity using mass spectrometry-based metabolomics workflows Frontiers in Plant Science 5

Turner, Marie, Heuberger, Adam L, Kirkwood, Jay S., Collins, Carl, Wolfrum, Edward J., Broeckling, Corey D, Prenni, Jessica E, Jahn, Courtney Elaine, Non-targeted Metabolomics in Diverse Sorghum Breeding Lines Indicates Primary and Secondary Metabolite Profiles Are Associated with Plant Biomass Accumulation and Photosynthesis Frontiers in Plant Science 7

Bagheri Toulabi, Sahar, Jablonski, Becca BR, Holm, David G, Carolan, Michael S, Heuberger, Adam L, (2022) Grower decision-making factors in adoption of specialty cultivars: A case study of potatoes in the San Luis Valley Plos One 17 6

Joshi, Janak Raj, Yao, Linxing, Charkowski, Amy Olymbia, Heuberger, Adam L, (2021) Metabolites from Wild Potato Inhibit Virulence Factors of the Soft Rot and Blackleg Pathogen Pectobacterium brasiliense MOLECULAR PLANT-MICROBE INTERACTIONS 34 1 100-109

Lavergne, Florent Didier, Broeckling, Corey D, Brown, Kitty J, Cockrell, Darren Matthew, Haley, Scott D, Peairs, Frank B, Pearce, Stephen P, Wolfe, Lisa M, Jahn, Courtney Elaine, Heuberger, Adam L, (2020) Differential stem proteomics and metabolomics profiles for four wheat cultivars in response to the insect pest Wheat Stem Sawfly Journal of Proteome Research

Joshi, Janak R, Heuberger, Adam, Charkowski, Amy Olymbia, (2020) "Lessons from the wild: a unique chemistry of wild potato that enables resistance to bacterial disease" Phytopathology 110 12 152S

Gredell, Devin Andrew, Schroeder, Amelia R, Belk, Keith, Broeckling, Corey D, Heuberger, Adam L, Kim, Soo-Young, King, D Andy, Shackelford, Steven D, Sharp, Julia L, Wheeler, Tommy L, others, , (2019) Comparison of Machine Learning Algorithms for Predictive Modeling of Beef Attributes Using Rapid Evaporative Ionization Mass Spectrometry (REIMS) Data Scientific reports 9 1 5721

Toulabi, Sahar, Jablonski, Becca BR, Holm, Dave G, Carolan, Michael S, Heuberger, Adam L, (2019) "Factors Affecting Farmers' Decision to Adopt Specialty Potato Varieties: A Case Study of San Luis Valley Colorado Potato Growers"

Sedlacko, Erin M, Jahn, Courtney Elaine, Heuberger, Adam L, Sindt, Nathan Michael, Miller, Hannah, Borch, Thomas, Blaine, Andrea C., Cath, Tzahi Y., Higgins, Christopher P., (2019) Potential for Beneficial Reuse of Oil and Gas-Derived Produced Water in Agriculture: Physiological and Morphological Responses in Spring Wheat (Triticum aestivum) ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 38 8 1756-1769

Forster, Genevieve M, Stockman, Jonathan, Stockman, Jonathan, Noyes, Noelle Robertson, Heuberger, Adam L, Broeckling, Corey D, Bantle, Collin Matthew, Ryan, Elizabeth P, (2018) A Comparative Study of Serum Biochemistry, Metabolome and Microbiome Parameters of Clinically Healthy, Normal Weight, Overweight, and Obese Companion Dogs Topics in Companion Animal Medicine

Foraker, B.A., Woerner, D.R., Gredell, D.A., Legako, J.F., Tatum, J.D., Martin, J.N., Delmore, R.J., Heuberger, Adam L, Belk, K.E., (2018) "Identifying the influence of post-mortem aging length and method on flavor and tenderness of beef strip loins" Proc. 71st Recip. Meat Conf

Sindt, Nathan Michael, Robison, Faith, Brick, Mark A, Schwartz, Howard F, Heuberger, Adam L, Prenni, Jessica E, (2018) MALDI-TOF-MS with PLS Modeling Enables Strain Typing of the Bacterial Plant Pathogen Xanthomonas axonopodis Journal of The American Society for Mass Spectrometry 29 2 413-421

Lavergne, Florent Didier, Broeckling, Corey D, Cockrell, Darren Matthew, Haley, Scott D, Peairs, Frank B, Jahn, Courtney Elaine, Heuberger, Adam L, (2018) GC-MS Metabolomics to Evaluate the Composition of Plant Cuticular Waxes for Four Triticum aestivum Cultivars International Journal of Molecular Sciences 19 2

Tembrock, Luke R, Broeckling, Corey D, Heuberger, Adam L, Simmons, Mark, Stermitz, Frank R, Uvarov, Jessica M, (2017) Employing GC-MS and two-stage derivatization to assay for cathine and related stimulant alkaloids across the Celastraceae Phytochemical Analysis 28 257-266

Tembrock, , Broeckling, , Heuberger, Adam L, Simmons, , Stermitz, , Uvarova, , Employing GC-MS and two-stage derivitization to assay for cathine and related stimulant alkaloids throughout the Celastraceae Phytochemical Analysis

Sessions-Bresnahan, DR, Heuberger, Adam L, Schauer, KL, Carnevale, EM, (2016) Effect of obesity on the preovulatory follicle and lipid fingerprint of equine oocytes Biology of Reproduction

Heuberger, Adam L, Broeckling, CD, Sedin, D, Holbrook, C, Guerdrum, L, Kirkpatrick, K, Prenni, JE, (2016) Evaluation of non-volatile metabolites in beer stored at high temperature as an accelerated method to predict flavor stability Food Chemistry

Santangelo, , Heuberger, Adam L, Blanco, , Forrellad, , Niquel, , Klepp, , Jackson, , Bigi, , (2016) Metabolic profile of Mycobacterium smegmatis revealed that Mce4 proteins are relevant for the lipid homeostasis Metabolomics 12.6 1-11

Heuberger, Adam L, Prenni , JE, Broeckling, , (2016) Non-targeted Metabolite Profiling in Next-Generation Plant Breeding: A Case Study in Malting Barley LC GC Europe 29 3 154-158

Heuberger, Adam L, Turner, , Kirkwood, , Collins, , Broeckling, , Prenni, , Jahn, , (2016) Non-targeted metabolomics in diverse sorghum breeding lines indicates primary and secondary metabolite profiles are associated with plant biomass accumulation and photosynthesis Frontiers in Plant Science 7 953

Abdel-Ghany, , Day, , Heuberger, Adam L, Broeckling, , Reddy, , (2016) Production of phloroglucinol, a platform chemical, in Arabidopsis using a bacterial gene Scientific Reports 6:38483

Abdel-Ghany, Salah Esmat, Day, Irene, Heuberger, Adam L, Broeckling, Corey D, Reddy, Anireddy N, (2016) Production of Phloroglucinol, a Platform Chemical, in Arabidopsis using a Bacterial Gene Scientific Reports 6

Sindt, Nathan Michael, Prenni, Jessica E, Manmathan, Harish Kumarimandhiram, Haley, Scott D, Jahn, Courtney Elaine, Heuberger, Adam L, (2016) "Physioogic and metabolic effects of a mitochondrial inhibitor fungicide on Colorado hard red winter wheat varieties." CSU Graduate Student Showcase

Turner, Marie, Heuberger, Adam L, Kirkwood, Jay S, Collins, Carl C, Wolfrum, Edward J, Broeckling, Corey D, Prenni, Jessica E, Jahn, Courtney Elaine, (2016) Morphological, Physiological and Metabolic Diversity in Sorghum and Association to Biomass Composition and Yield. Frontiers in Plant Science 7 953

Heuberger, Adam L, Broeckling, Corey D, Sedin, Dana Louis, Holbrook, Christian, Barr, Lindsay, Kirkpatrick, Kaylyn, Prenni, Jessica E, (2016) Evaluation of non-volatile metabolites in beer stored at high temperature and utility as an accelerated method to predict flavour stability Food Chemistry 200 301-307

Krisher, RL, Heuberger, Adam L, Paczkowski, M, Stevens, J, Popsil, C, Prather, RS, Sturmey, RG, Herrick, JR, Schoolcraft, WB, (2015) Applying metabolomic analyses to the practice of embryology: Physiology, development and assisted reproductive technology Reproduction, Fertility and Development 27.4 602-620

Jahn, , Heuberger, Adam L, Cockrell, , Manmathan, , Randolph, , Haley, , Peairs, , Broeckling, , (2015) "Bringing the lab to the field – How Plant Biotechnology Can Improve Wheat" Colorado State University Agricultural Experiment Station

Forster, G, Heuberger, Adam L, Broeckling, C, Bauer, J, Ryan, E, (2015) Cooked Navy Bean Phytochemicals modulate the Fecal and Urine canine Metabolome Current Metabolomics 3.2 90-101

Weir, T, Sheflin, A M, Borrensen, E C, Wdowik, M, Rao, S, Brown, R J, Heuberger, Adam L, Broeckling, C D, Ryan, E P, (2015) Dietary intervention with heat-stabilized rice bran modulates gut microbiota and metabolites in healthy participants Nutrients 7 2 1282-1300

Heuberger, Adam L, Prenni, JE, Broeckling, CD, (2015) Non-targeted Metabolite Profiling in Next-Generation Plant Breeding: A Case Study in Malting Barley LC-GC North America magazine December

Sheflin, Amy Marie, Borresen, Erica C, Wdowik, Melissa, Rao, Sangeeta, Brown, R. J., Heuberger, Adam L, Broeckling, Corey D, Weir, Tiffany L, Ryan, Elizabeth P, (2015) Pilot dietary intervention with heat-stabilized rice bran modulates stool microbiota and metabolites in healthy adults Nutrients 7 2 1282-300

Robison, FM, Heuberger, Adam L, Ogg, B, Schwartz, HF, Brick, MA, Prenni, JE, (2015) Proteome Characterization in Leaves of Common Bean Proteomes 3 3 236-248

Brick, Mark A, Heuberger, Adam L, (2015) Proteome characterization of leaves in common bean Proteome Proteomes 2015

Weyman, P D, Beeri, K, Lefebvre, S C, Rivera, J, McCarthy, J K, Heuberger, Adam L, Peers, Graham, Allen, A E, Dupont, C L, (2015) Inactivation of Phaeodactylum tricornutum urease gene using transcription activator-like effector nuclease-based targeted mutagenesis. Plant biotechnology journal 13 4 460-70

Sheflin, Amy M, Borrensen, Erica C, Wdowik, Melissa, Rao, Sangeeta, Brown, Regina J, Heuberger, Adam L, Broeckling, Corey D, Weir, Tiffany L, Ryan, Elizabeth P, (2015) Dietary intervention with heat-stabilized rice bran modulates gut microbiota and metabolites in healthy participants Nutrients 7 2 1282-1300

Sessions-Bresnahan, DR , Schauer, KL, Heuberger, Adam L, Prenni, JE, Carnevale, EM, (2014) "Alterations in the equine oocyte and follicle associated with obesity and metabolic syndrome" Journal of Equine Veterinary Science 34 1

Heuberger, Adam L, Broeckling, CD, Kirkpatrick, K, Prenni, JE, (2014) Application of non-targeted metabolite profiling to discover novel markers of quality traits in an advanced population of malting barley Plant Biotechnology Journal 12 2 147-160

Krisher, RL, Greene, AF, Stevens, J, Heuberger, Adam L, Schoolcraft, WB, (2014) "Elevated maternal BMI results in severely disrupted blastocyst metabolism" Fertility and Sterility 102 3 E257

Heuberger, Adam L, Robison, FM, Lyons, SM, Broeckling, CD, Prenni, JE, (2014) Evaluating plant immunity using mass spectrometry-based metabolomics workflows Frontiers in Plant Science 5 291

Weyman , PD, Beeri , K, Lefebvre , SC, Rivera, J, Heuberger, Adam L, Peers, G, Allen, AE, Dupont, CL, (2014) Inactivation of Phaeodactylum tricornutum urease gene using TALEN-based targeted mutagenesis Plant Biotechnology Journal

Krisher, RL, Greene, AF, Stevens, J, Heuberger, Adam L, Schoolcraft, WB, (2014) "Metabolomic profile of embryo culture medium on day 3 is associated with subsequent blastocyst development" Fertility and Sterility 102 3 E209

Yang, W, Catalanotti, C, D'Adamo, S, Wittkopp, T M, Ingram-Smith, C J, Mackinder, L, Miller, T E, Heuberger, Adam L, Peers, Graham, Smith, K S, Jonikas, M C, Grossman, A R, Posewitz, M C, (2014) Alternative acetate production pathways in Chlamydomonas reinhardtii during dark anoxia and the dominant role of chloroplasts in fermentative acetate production. The Plant cell 26 11 4499-518

Heuberger, Adam L, Prenni , JE, (2014) Utility of metabolite profiling by mass spectrometry to facilitate plant breeding for food quality: a case study in malting barley Information Systems for Biotechnology News Report

Heuberger, Adam L, Broeckling, Corey D, Kirkpatrick, Kaylyn R., Prenni, Jessica E, (2014) Application of nontargeted metabolite profiling to discover novel markers of quality traits in an advanced population of malting barley Plant Biotechnology Journal 12 2 147-160

Ryan, EP, Heuberger, Adam L, Broeckling, CD, Ollila, C, Borresen, E, Prenni, JE, (2013) Advances in Nutritional Metabolomics Current Metabolomics 1 109-120

Broeckling, Corey D, Heuberger, Adam L, Prince, Jonathan A, Ingelsson, Erik, Prenni, Jessica E, (2013) Assigning precursor--product ion relationships in indiscriminant MS/MS data from non-targeted metabolite profiling studies Metabolomics 9 1 33--43

Broeckling , CD, Heuberger, Adam L, Prince , J, Ingelsson , E, Prenni , JE, (2013) Assigning precursor–product ion relationships in indiscriminant MS/MS data from non-targeted metabolite profiling studies Metabolomics 9 1 33-43

Weir, T, Marschke, RF, Brown, RJ, O'Malia, J, Dickson, E, Bazan, M, Sheflin, A, Heuberger, Adam L, Borresen, E, Pettine, S, Ryan, E, (2013) "Fecal metabolome and microflora differences between colorectal cancer patients and healthy adults" J. of Clinical Oncology 31 15

Abdel-Ghany, S, Day, I, Heuberger, Adam L, Broeckling, C, Reddy, ASN, (2013) Metabolic engineering of Arabidopsis for butanetriol production using bacterial genes Metabolic Engineering 20 109-120

Abdel-Ghany, Salah Esmat, Day, Irene, Heuberger, Adam L, Broeckling, Corey D, Reddy, Anireddy N, (2013) Metabolic engineering of Arabidopsis for butanetriol production using bacterial genes Metabolic engineering 20 109–120

Krisher, RL, Heuberger, Adam L, Paczkowski, M, Stevens, J, Rawlins, M, Schoolcraft, WB, (2013) "Metabolomic profiling of human embryos during in vitro culture: which metabolites matter when?" Fertility and Sterility 100 (3 Supplement) S243-244

Weir, Tiffany L, Manter, D. K., Sheflin, Amy Marie, Barnett, B. A., Heuberger, Adam L, Ryan, Elizabeth P, (2013) Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults PLoS One 8 8 e70803

Weir, Tiffany L, Manter, D K, Sheflin, A M, Barnett, B A, Heuberger, Adam L, Ryan, E P, (2013) Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults PLoS One

Barnes, B, Wilson, M, Carr, P, Vitha, MF, Broeckling, CD, Heuberger, Adam L, Prenni, J, Janis, GC, Corcoran, H, Snow, NH, Chopra, S, Tawfall, A, Sumner, LW, Boswell, PG, (2013) ’Retention Projection’” Enables Reliable Use of Shared Gas Chromatographic Retention Data Across Labs, Instruments, and Methods Analytical Chemistry 85 23 1284-1289

Barnes, Brian B., Wilson, Michael B., Carr, Peter W., Vitha, Mark F., Broeckling, Corey D, Heuberger, Adam L, Prenni, Jessica E, Janis, Gregory C., Corcoran, Henry, Snow, Nicholas H., Chopra, Shilpi, Dhandapani, Ramkumar, Tawfall, Amanda, Sumner, Lloyd W., Boswell, Paul G., (2013) “Retention Projection” Enables Reliable Use of Shared Gas Chromatographic Retention Data Across Laboratories, Instruments, and Methods Analytical Chemistry 85 23 11650-11657

Prenni , JE, Heuberger, Adam L, Sedin, D, (2013) "Non-targeted Metabolite Profiling by UPLC-MS: A Case Study in Beer Reveals Effect of Temperature on Non-Volatile Small Molecules During Storage" LC-GC North America

Heuberger, Adam L, Broeckling, Corey D, Lewis, Matthew R., Salazar, Lauren, Bouckaert, Peter, Prenni, Jessica E, (2012) Metabolomic profiling of beer reveals effect of temperature on non-volatile small molecules during short-term storage Food Chemistry 135 3 1284-1289

Broeckling, CD, Heuberger, Adam L, Prenni, JE, (2012) Large scale non-targeted metabolomic profiling of serum by ultra performance liquid chromatograph-mass spectrometry (UPLC-MS) Journal of Visualized Experiments 73 e50242

Heuberger, Adam L, Broeckling , CD, Lewis , MR, Salazar , L, Bouckaert , P, Prenni , JE, (2012) Metabolomic profiling of beer reveals effect of temperature on non-volatile small molecules during short-term storage Food Chemistry 135 3 1284-1289

Vanamala, J, Kester, AC, Heuberger, Adam L, L, Reddivari, (2012) Mitigation of Obesity-Promoted Diseases by Black Cumin and Thymoquinone Plant Foods for Human Nutrition 67 2 111-119

Ryan, EP, Heuberger, Adam L, Weir, T, Barnett, B, Broeckling, CD, Prenni, JE, (2011) Rice bran fermented with Saccharomyces boulardii generates a novel metabolite profile with bioactivity Journal of Agricultural and Food Chemistry 59 5 1862-1870

Weir, Tiffany L, Heuberger, Adam L, Ryan, E P, Barnett, B A, Broeckling, C D, Prenni, J E, (2011) Rice bran fermented with Saccharomyces boulardii generates novel metabolite profiles with bioactivity J Food Agric Chem

Ryan, Elizabeth P, Heuberger, Adam L, Weir, Tiffany L, Barnett, B., Broeckling, Corey D, Prenni, Jessica E, (2011) Rice bran fermented with saccharomyces boulardii generates novel metabolite profiles with bioactivity J Agric Food Chem 59 5 1862-70

Ryan, Elizabeth P, Heuberger, Adam L, Weir, Tiffany L, Barnett, Brittany, Broeckling, Corey D, Prenni, Jessica E, (2011) Rice Bran Fermented withSaccharomyces boulardiiGenerates Novel Metabolite Profiles with Bioactivity Journal of Agricultural and Food Chemistry 59 5 1862-1870

Melito, S, Heuberger, Adam L, Cook, D, Diers, B, MacGuidwin , A, Bent , A, (2010) A nematode demographics assay in transgenic roots reveals no significant impacts of the Rhg1 locus LRR-Kinase on soybean cyst nematode resistance BMC Plant Biology 10 104

Leach , J, Davidson , R, Mauleon , R, Carillo , G, Jahn , C, Snelling , J, Bruce , M, Heuberger, Adam L, Ishihara, H, Tanger , P, Stephens , J, Vera Cruz , C, Leung , H, (2010) "Genome analyses to understand durable disease resistance in rice" APS Press

Heuberger, Adam L, Lewis, MR, Chen, MH, Brick, MA, Leach, JE, Ryan, EP, (2010) Metabolomic and functional genomic analyses reveal varietal differences in bioactive compounds of cooked rice PLoS ONE 5 9 e12915

Heuberger, Adam L, Lewis, M. R., Chen, M. H., Brick, Mark A, Leach, Jan E, Ryan, Elizabeth P, (2010) Metabolomic and functional genomic analyses reveal varietal differences in bioactive compounds of cooked rice PLoS One 5 9 e12915

Heuberger, Adam L, Lewis, M R, Chen, Mingxuan, Brick, Mark A, Leach, Jan E, Ryan, Elizabeth P, (2010) Metabolomic and functional genomic analyses reveal varietal differences in bioactive compounds of cooked rice. PloS one 5 9 e12915

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