van der Pol, Laura K., , Robertson, Andy, Schipanski, Meagan J., Calderon, Francisco, Wallenstein, Matthew, Cotrufo, M. Francesca, (2022) Addressing the soil carbon dilemma: Legumes in intensified rotations regenerate soil carbon while maintaining yields in semi-arid dryland wheat farms AGRICULTURE ECOSYSTEMS & ENVIRONMENT 330

Pressler, Yamina, Boot, Claudia, Abiven, Samuel, Lugato, Emanuele, Cotrufo, M. Francesca, (2022) Continental-scale measurements of soil pyrogenic carbon in Europe SOIL RESEARCH

Lugato, Emanuele, Lavallee, Jocelyn Marie, Haddix, Michelle, Panagos, Panos, Cotrufo, M. Francesca, (2022) "Different climate sensitivity of particulate and mineral-associated soil organic matter (vol 14, pg 295, 2021)" NATURE GEOSCIENCE 15 6 509-509

Kelly, Courtland, Haddix, Michelle, Byrne, Patrick F, Cotrufo, M. Francesca, Schipanski, Meagan M., Kallenbach, Cynthia M, Wallenstein, Matthew, Fonte, Steven John, (2022) Divergent belowground carbon allocation patterns of winter wheat shape rhizosphere microbial communities and nitrogen cycling activities SOIL BIOLOGY & BIOCHEMISTRY 165

Smith, Pete, Beaumont, Linda, Bernacchi, Carl J., Byrne, Maria, Cheung, William, Conant, Richard T., Cotrufo, Francesca Francesca, Feng, Xiaojuan, Janssens, Ivan, Jones, Hefin, Kirschbaum, Miko U. F., , Kobayashi, Kazuhiko, LaRoche, Julie, Luo, Yiqi, McKechnie, Andrew, Penuelas, Josep, Piao, Shilong, Robinson, Sharon, Sage, Rowan F., Sugget, David J., Thackeray, Stephen J., Way, Danielle, Long, Stephen P., (2022) "Essential outcomes for COP26" GLOBAL CHANGE BIOLOGY 28 1 1-3

Bai, Yongfei, Cotrufo, M. Francesca, (2022) "Grassland soil carbon sequestration: Current understanding, challenges, and solutions" SCIENCE 377 6606 603-608

Rocci, Katherine S., Barker, Kaydee, Seabloom, Eric W., Borer, Elizabeth T., Hobbie, Sarah E., Bakker, Jonathan D., MacDougall, Andrew S., McCulley, Rebecca L., Moore, Joslin L., Raynaud, Xavier, Stevens, Carly J., Cotrufo, M. Francesca, (2022) Impacts of nutrient addition on soil carbon and nitrogen stoichiometry and stability in globally-distributed grasslands BIOGEOCHEMISTRY 159 3 353-370

Mosier, Samantha, Apfelbaum, Steve, Byck, Peter, Ippolito, Jim, Cotrufo, M. Francesca, (2022) Improvements in soil properties under adaptive multipaddock grazing relative to conventional grazing AGRONOMY JOURNAL 114 4 2584-2597

Mcclelland, Shelby C, Cotrufo, M. Francesca, Haddix, Michelle, Paustian, Keith H, Schipanski, Meagan Erin, (2022) Infrequent compost applications increased plant productivity and soil organic carbon in irrigated pasture but not degraded rangeland AGRICULTURE ECOSYSTEMS & ENVIRONMENT 333

Nuneza, Agustin, Cotrufo, Francesca Francesca, Schipanski, Meagan Erin, (2022) Irrigation effects on the formation of soil organic matter from aboveground plant litter inputs in semiarid agricultural systems GEODERMA 416

Kelly, Courtland, Haddix, Michelle, Byrne, Patrick F, Cotrufo, Francesca Francesca, Schipanski, Meagan Erin, Kallenbach, Cynthia M, Wallenstein, Matthew, Fonte, Steven John, (2022) Long-term compost amendment modulates wheat genotype differences in belowground carbon allocation, microbial rhizosphere recruitment and nitrogen acquisition SOIL BIOLOGY & BIOCHEMISTRY 172

van der Pol, Laura K., , Nester, Brian, Schlautman, Brandon, Crews, Timothy, Cotrufo, M. Francesca, (2022) Perennial grain Kernza (R) fields have higher particulate organic carbon at depth than annual grain fields CANADIAN JOURNAL OF SOIL SCIENCE

Rui, Yichao, Jackson, Randall D., Cotrufo, M. Francesca, Sanford, Gregg R., Spiesman, Brian J., Deiss, Leonardo, Culman, Steven W., Liang, Chao, Ruark, Matthew D., (2022) Persistent soil carbon enhanced in Mollisols by well- managed grasslands but not annual grain or dairy forage cropping systems PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 119 7

Cotrufo, M. Francesca, Lavallee, Jocelyn Marie, (2022) Soil organic matter formation, persistence, and functioning: A synthesis of current understanding to inform its conservation and regeneration ADVANCES IN AGRONOMY, VOL. 172 172 1-66

Cotrufo, M. Francesca, Haddix, Michelle, Kroeger, Marie E., Stewart, Catherine E., (2022) The role of plant input physical-chemical properties, and microbial and soil chemical diversity on the formation of particulate and mineral-associated organic matter SOIL BIOLOGY & BIOCHEMISTRY 168

Kelly, Courtland, Haddix, Michelle, Byrne, Patrick F, Cotrufo, M. Francesca, Schipanski, Meagan Erin, Kallenbach, Cynthia M, Wallenstein, Matthew, Fonte, Steven John, (2022) Divergent belowground carbon allocation patterns of winter wheat shape rhizosphere microbial communities and nitrogen cycling activities Soil Biology and Biochemistry 165 108518

Smith, Pete, Beaumont, Linda, Bernacchi, Carl J., Byrne, Maria, Cheung, William, Conant, Richard T., Cotrufo, Francesca Francesca, Feng, Xiaojuan, Janssens, Ivan, Jones, Hefin, Kirschbaum, Miko U., Kobayashi, Kazuhiko, LaRoche, Julie, Luo, Yiqi, McKechnie, Andrew, Penuelas, Josep, Piao, Shilong, Robinson, Sharon, Sage, Rowan F., Sugget, David J., Thackeray, Stephen J., Way, Danielle, Long, Stephen P., (2022) Essential outcomes for COP26 Global Change Biology 28 1 1-3

Mosier, Samantha, Apfelbaum, Steven, Byck, Peter, Calderon, Francisco, Teague, Richard, Thompson, Ry, Cotrufo, M. Francesca, (2021) Adaptive multi-paddock grazing enhances soil carbon and nitrogen stocks and stabilization through mineral association in southeastern US grazing lands JOURNAL OF ENVIRONMENTAL MANAGEMENT 288

Prescott, Cindy E., Rui, Yichao, Cotrufo, M. Francesca, Grayston, Sue J., (2021) Managing plant surplus carbon to generate soil organic matter in regenerative agriculture JOURNAL OF SOIL AND WATER CONSERVATION 76 6 99A-104A

Zhang, Yao, Lavallee, Jocelyn Marie, Robertson, Andy D., Even, Rebecca Jean, Ogle, Stephen M, Paustian, Keith H, Cotrufo, M. Francesca, (2021) Simulating measurable ecosystem carbon and nitrogen dynamics with the mechanistically defined MEMS 2.0 model BIOGEOSCIENCES 18 10 3147-3171

Rocci, Katherine S., Lavallee, Jocelyn Marie, Stewart, Catherine E., Cotrufo, M. Francesca, (2021) Soil organic carbon response to global environmental change depends on its distribution between mineral-associated and particulate organic matter: A meta-analysis SCIENCE OF THE TOTAL ENVIRONMENT 793

Ramirez, Paulina B., Calderon, Francisco, Haddix, Michelle, Lugato, Emanuele, Cotrufo, M. Francesca, (2021) Using Diffuse Reflectance Spectroscopy as a High Throughput Method for Quantifying Soil C and N and Their Distribution in Particulate and Mineral-Associated Organic Matter Fractions FRONTIERS IN ENVIRONMENTAL SCIENCE 9

Leichty, Sarah I, Cotrufo, Francesca Francesca, Stewart, C., (2021) Less efficient residue-derived soil organic carbon formation under no-till irrigated corn Soil Science Society of America Journal 1-15

Mitchell, Elaine, Scheer, Clemens, Rowlings, David, Cotrufo, Francesca Francesca, Conant, Richard T., Grace, Peter, (2021) Important constraints on soil organic carbon formation efficiency in subtropical and tropical grasslands Global Change Biology 27 20 5383-5391

Lugato, Emanuele, Lavallee, Jocelyn Marie, Haddix, Michelle, Panagos, Panos, Cotrufo, M. Francesca, (2021) Different climate sensitivity of particulate and mineral-associated soil organic matter Nature Geoscience 14 5 295-300

Foster, Erika Jean, Baas, Peter, Wallenstein, Matthew, Cotrufo, M. Francesca, (2020) Precision biochar and inoculum applications shift bacterial community structure and increase specific nutrient availability and maize yield APPLIED SOIL ECOLOGY 151

Tan, Xiangping, Machmuller, Megan B, Cotrufo, M. Francesca, Shen, Weijun, (2020) Shifts in fungal biomass and activities of hydrolase and oxidative enzymes explain different responses of litter decomposition to nitrogen addition BIOLOGY AND FERTILITY OF SOILS 56 3 423-438

Avera, Bethany, Rhoades, Charles C., Calderon, Francisco, Cotrufo, M. Francesca, (2020) Soil C storage following salvage logging and residue management in bark beetle-infested lodgepole pine forests FOREST ECOLOGY AND MANAGEMENT 472

Tan, Xiangping, Machmuller, Megan B, Huang, Feng, He, Jinhong, Chen, Jie, Cotrufo, M. Francesca, Shen, Weijun, (2020) Temperature sensitivity of ecoenzyme kinetics driving litter decomposition: The effects of nitrogen enrichment, litter chemistry, and decomposer community SOIL BIOLOGY & BIOCHEMISTRY 148

Mitchell, Elaine, Scheer, Clemens, Rowlings, David, Cotrufo, M. Francesca, Conant, Richard T., Friedl, Johannes, Grace, Peter, (2020) Trade-off between 'new' SOC stabilisation from above-ground inputs and priming of native C as determined by soil type and residue placement BIOGEOCHEMISTRY 149 2 221-236

Haddix, Michelle, Gregorich, E., Helgason, B., Janzen, H., Ellert, B., Cotrufo, Francesca Francesca, (2020) Climate, carbon content, and soil texture control the independent formation and persistence of particulate and mineral-associated organic matter in soil. Geoderma 363 114160

Lavallee, Jocelyn Marie, Soong, Jennifer, Cotrufo, Francesca, (2020) Conceptualizing soil organic matter into particulate and mineral-associated forms to address global change in the 21st century Global Change Biology 26 261-273

Bruno, R., Thackeray, S., Smith, P., Robinson, S., Kirschbaum, M., Bernacchi, C., Byrne, M., Cheung, W., Cotrufo, Francesca Francesca, Hartley, S., Janssens, I., Jones, H., Kobayashi, K., Luo, Y., Penuelas, J., Sage, R., Way, D., Long, S., (2020) Civil-disobedience movements such as School Strike for the Climate are raising public awareness of the climate-change emergency Global Change Biology

Wang, X., Wang, C., Cotrufo, Francesca Francesca, Sun, L., Jiang, P., Liu, Z., Bai, E., (2020) Elevated temperature increases the accumulation of microbial necromass nitrogen in soil via increasing microbial turnover Global Change Biology

Tan, Xiangping, Machmuller, Megan B, He, J, Huan, F, Cotrufo, Francesca Francesca, Shen, Weijun, (2020) Temperature sensitivity of ecoenzyme kinetics driving litter decomposition: The effects of nitrogen enrichment, litter chemistry, and decomposer community Soil Biology and Biochemistry 148 107878

Pressler, Yamina, Moore, John C, Cotrufo, Francesca, (2019) Belowground community responses to fire: meta-analysis reveals contrasting responses of soil microorganisms and mesofauna OIKOS 128 3 309-327

Rocci, Katherine S, Fonte, Steven John, von Fischer, Joseph C, Cotrufo, M Francesca, (2019) Nitrogen Dynamics in an Established Alfalfa Field under Low Biochar Application Rates Soil Systems 3 4 77

Pressler, Yamina, Hunter-Laszlo, Mary, Bucko, Sarah, Covitt, Beth A., Urban, Sarah, Benton, Christina, Bartholomew, Michelle, Morrison, Amanda J, Foster, Erika Jean, Parker, Sylvia D., Cotrufo, Francesca Francesca, Moore, John C, (2019) Teaching Authentic Soil & Plant Science in Middle School Classrooms with a Biochar Case Study AMERICAN BIOLOGY TEACHER 81 4 256-268

Perveen, Nazia, Barot, Sebastien, Maire, Vincent, Cotrufo, M. Francesca, Shahzad, Tanvir, Blagodatskaya, Evgenia, Stewart, Catherine E., Ding, Weixin, Siddiq, Muhammad Rashid, Dimassi, Bassem, Mary, Bruno, Fontaine, Sebastien, (2019) Universality of priming effect: An analysis using thirty five soils with contrasted properties sampled from five continents SOIL BIOLOGY & BIOCHEMISTRY 134 162-171

Cotrufo, Francesca Francesca, Ranalli, Maria Giovanna, Haddix, Michelle, Six, Johan, Lugato, Emanuele, (2019) Soil carbon storage informed by particulate and mineral-associated organic matter Nature geosciences

Andres, P., Rossell-Melé, A., Colomer, F., Denef, Karolien, Cotrufo, Francesca Francesca, Riba, M., Alcañiz, JM., (2019) Belowground biota responses to maize biochar addition to the soil of a Mediterranean vineyard Science of the Total Environment 660 1522-1532

Lynch, Laurel, Machmuller, Megan B, Boot, Claudia, Covino, Tim P, Rithner, Christopher D, Cotrufo, Francesca Francesca, Hoyt, David W., Wallenstein, Matthew, (2019) Dissolved Organic Matter Chemistry and Transport Along an Arctic Tundra Hillslope Global Biogeochemical Cycles 33 1 47-62

Jiang, Xinyu, Tan, Xiangping, Cheng, Jiong, Haddix, Michelle, Cotrufo, Francesca Francesca, (2019) Interactions between aged biochar, fresh low molecular weight carbon and soil organic carbon after 3.5 years soil-biochar incubations GEODERMA 333 99-107

Fulton-Smith, Sarah, Cotrufo, Francesca Francesca, (2019) Pathways of soil organic matter formation from above and belowground inputs in a Sorghum bicolor bioenergy crop Global Change Biology Bioenergy

Mosier, Samantha, Davies, C., Kane, M., Paustian, Keith H, Cotrufo, Francesca Francesca, (2019) Soil organic matter pools under management intensification of loblolly pine plantations Forest Ecology and Management 447 60-66

Robertson, Andy D., Paustian, Keith H, Ogle, Stephen M, Wallenstein, Matthew, Lugato, Emanuele, Cotrufo, Francesca Francesca, (2019) Unifying soil organic matter formation and persistence frameworks: the MEMS model BIOGEOSCIENCES 16 6 1225-1248

Mitchell, Elaine, Scheer, Clemens, Rowlings, David, Conant, Rich T, Cotrufo, Francesca Francesca, Grace, Peter, (2018) Amount and incorporation of plant residue inputs modify residue stabilisation dynamics in soil organic matter fractions AGRICULTURE ECOSYSTEMS & ENVIRONMENT 256 82-91

Giannetta, Beatrice, Plaza, Cesar, Vischetti, Costantino, Cotrufo, Francesca Francesca, Zaccone, Claudio, (2018) Distribution and thermal stability of physically and chemically protected organic matter fractions in soils across different ecosystems BIOLOGY AND FERTILITY OF SOILS 54 5 671-681

Soong, Jennifer L., Maranon-Jimenez, Sara, Cotrufo, Francesca Francesca, Boeckx, Pascal, Bode, Samuel, Guenet, Bertrand, Penuelas, Josep, Richter, Andreas, Stahl, Clement, Verbruggen, Erik, Janssens, Ivan A., (2018) Soil microbial CNP and respiration responses to organic matter and nutrient additions: Evidence from a tropical soil incubation SOIL BIOLOGY & BIOCHEMISTRY 122 141-149

Foster, Erika Jean, Fogle, Emily J., Cotrufo, Francesca Francesca, (2018) Sorption to Biochar Impacts -Glucosidase and Phosphatase Enzyme Activities AGRICULTURE-BASEL 8 10

Ramlow, Matt, Cotrufo, Francesca Francesca, (2018) Woody biochar's greenhouse gas mitigation potential across fertilized and unfertilized agricultural soils and soil moisture regimes GLOBAL CHANGE BIOLOGY BIOENERGY 10 2 108-122

Ramlow, Matthew Alan, Foster, Erika Jean, Del Grosso, S. J., Cotrufo, Francesca Francesca, (2018) "The Limited Benefits of Biochar in Limited Irrigation Maize" Agriculture, Ecosystems and Environment 269 71-81

Lynch, Laurel, Machmuller, Megan B, Cotrufo, Francesca Francesca, Paul, Eldor A, Wallenstein, Matthew, (2018) Tracking the fate of fresh carbon in the Arctic tundra: Will shrub expansion alter responses of soil organic matter to warming? Soil Biology and Biochemistry 120 134-144

Lavallee, Jocelyn Marie, Conant, Rich T, Paul, Eldor A, Cotrufo, Francesca Francesca, (2018) Incorporation of shoot versus root-derived 13C and 15N into mineral-associated organic matter fractions: elucidating mechanisms using a litter-soil slurry incubation Biogeochemistry

Poeplau, C., Don, A., Six, J., Kaiser, M., Benbi, D., Chenu, C., Cotrufo, Francesca Francesca, Derrien, D., Gioacchini, P., Grand, S., Gregorich, E., Griepentrog, M., Gunina, A., Haddix, M., Kuzyakov, Y., Kühnel, A., Macdonald, L. M., Soong, J., Trigalet, S., Vermeire, M. L., Rovira, P., van Wesemael, B., Wiesmeier, M., Yaesmin, S., Yevdomikov, I., Nieder, R., (2018) Isolating organic carbon fractions with varying turnover rates in temperate agricultural soils - A comprehensive method comparison Soil Biology and Biochemistry 125 10-26

Chabbi, Abbad, Lehmann, Johannes, Ciais, Philip , Loescher, Hanz, Cotrufo, Francesca Francesca, Don, Axel, SanClements, M., Schipper, L., Six, Johan, Smith, Pete, Rumpel, Cornelia, (2017) Aligning agriculture and climate policy Nature Climate Change 7 307-309

da Silva Oliveira, Dener Márcio, , Paustian, Keith H, Cotrufo, Francesca Francesca, Fiallos, Amanda Rocha, Cerqueira, Andressa Goncalves, Cerri, Carlos Eduardo Pellegrino, (2017) Assessing labile organic carbon in soils undergoing land use change in Brazil: A comparison of approaches Ecological Indicators 72 411–419

Soong, Jennifer L., Dam, Marie, Wall, Diana H, Cotrufo, Francesca Francesca, (2017) Below-ground biological responses to pyrogenic organic matter and litter inputs in grasslands FUNCTIONAL ECOLOGY 31 1 260-269

Rhoades, Charles C, Minatre, Kerri L, Pierson, Derek N, Fegel, Timothy S, Cotrufo, Francesca Francesca, Kelly, Eugene F, (2017) Examining the Potential of Forest Residue-Based Amendments for Post-Wildfire Rehabilitation in Colorado, USA Scientifica 2017

Andres, Pilar, Moore, John C, Cotrufo, Francesca, Denef, Karolien, Haddix, Michelle, Molowny-Horas, Roberto, Riba, Miguel, Wall, Diana H, (2017) Grazing and edaphic properties mediate soil biotic response to altered precipitation patterns in a semiarid prairie SOIL BIOLOGY & BIOCHEMISTRY 113 263-274

Tan, Xiangping, Machmuller, Megan B, Wang, Zhuoran, Li , X, He, W, Cotrufo, Francesca Francesca, Shen, W, (2017) Temperature enhances the affinity of soil alkaline phosphatase to Cd. Chemosphere 196 214-222

Harden, J W, Hugelius, G, Ahlström, A, Blankinship, J C, Bond-Lamberty, B, Lawrence, C R, Loisel, J, Malhotra, A, Jackson, R B, Ogle, Stephen M, Phillips, C, Ryals, R, Todd-Brown, K, Vargas, R, Vergara, S E, Cotrufo, Francesca Francesca, Keiluweit, M, Heckman, K A, Crow, S E, Silver, W L, DeLonge, M, Nave, L E, (2017) Networking our science to characterize the state, vulnerabilities, and management opportunities of soil organic matter. Global change biology

McKee, Georgina A, Soong, Jennifer L, Caldéron, Francisco, Borch, Thomas, Cotrufo, Francesca Francesca, (2016) An integrated spectroscopic and wet chemical approach to investigate grass litter decomposition chemistry Biogeochemistry 128 1-2 107–123

Martinez, Cristina, Alberti, Giorgio, Cotrufo, Francesca Francesca, Magnani, Federico, Zanotelli, Damiano, Camin, Federica, Gianelle, Damiano, Cescatti, Alessandro, Rodeghiero, Mirco, (2016) Belowground carbon allocation patterns as determined by the in-growth soil core 13 C technique across different ecosystem types Geoderma 263 140–150

Foster, Erika Jean, Hansen, Neil Charles, Wallenstein, Matt, Cotrufo, Francesca Francesca, (2016) Biochar and manure amendments impact soil nutrients and microbial enzymatic activities in a semi-arid irrigated maize cropping system Agriculture, Ecosystems & Environment 233 404–414

Ramlow, Matthew, Keske, Catherine, Cotrufo, Francesca Francesca, (2016) "Biochar in Colorado" Colorado State University Agricultural Extension Bulletin

Jiang, Xinyu, Denef, Karolien, Stewart, Catherine E, Cotrufo, Francesca Francesca, (2016) Controls and dynamics of biochar decomposition and soil microbial abundance, composition, and carbon use efficiency during long-term biochar-amended soil incubations Biology and Fertility of Soils 52 1 1–14

Haddix, Michelle, Paul, Eldor A, Cotrufo, Francesca Francesca, (2016) Dual, differential isotope labeling shows the preferential movement of labile plant constituents into mineral-bonded soil organic matter Global change biology

Shaw, Elizabeth Ashley, Denef, Karolien, de Tomasel, Cecilia Milano, Cotrufo, Francesca Francesca, Wall, Diana H, (2016) Fire affects root decomposition, soil food web structure, and carbon flow in tallgrass prairie SOIL 2 199-210

Soong, Jennifer, Dam, Miriam, Wall, Diana, Cotrufo, Francesca Francesca, (2016) Fire in the tallgrass prairie: belowground biological responses to pyrogenic organic matter inputs and fire history Journal of Functional Ecology

Smith, Pete, (2016) Global Change Pressures on Soils from Land Use and Management Global Change Biology

Jiang, Xinyu, Haddix, Michelle, Cotrufo, Francesca Francesca, (2016) Interactions between biochar and soil organic carbon decomposition: Effects of nitrogen and low molecular weight carbon compound addition Soil Biology and Biochemistry 100 92–101

Bingham, Andrew H, Cotrufo, Francesca Francesca, (2016) Organic nitrogen storage in mineral soil: Implications for policy and management Science of the Total Environment 551 116–126

Cotrufo, Francesca Francesca, Boot, Claudia, Abiven, Samuel, Foster, Erika Jean, Haddix, Michelle, Reisser, Moritz, Wurster, Christopher M, Bird, Michael I, Schmidt, Michael WI, (2016) Quantification of pyrogenic carbon in the environment: An integration of analytical approaches Organic Geochemistry 100 42–50

Cotrufo, Francesca Francesca, Boot, Claudia, Kampf, Stephanie K, Nelson, Peter August, Brogan, Daniel Joseph, Covino, Tim, Haddix, Michelle, MacDonald, Lee H, Rathburn, Sarah, Ryan-Bukett, Sandra, others, , (2016) Redistribution of pyrogenic carbon from hillslopes to stream corridors following a large montane wildfire Global Biogeochemical Cycles 30 9 1348–1355

Andres, Pilar, Moore, John C, Simpson, Rodney Thomas, Selby, Greg N, Cotrufo, Francesca Francesca, Denef, Karolien, Haddix, Michelle, Shaw, Elisabeth, Milano de Tomasel, Cecilia Cecilia, Molowny, R, Wall, Diana, (2016) Soil food web stability in response to grazing in a semi-arid prairie: the importance of soil heterogeneity Soil Biology and Biochemistry 97 131-143

Soong, Jennifer L, Vandegehuchte, Martijn L, Horton, Andrew J, Nielsen, Uffe N, Denef, Karolien, Shaw, Elizabeth Ashley, de Tomasel, Cecilia Milano, Parton, William J, Wall, Diana H, Cotrufo, Francesca Francesca, (2016) Soil microarthropods support ecosystem productivity and soil C accrual: evidence from a litter decomposition study in the tallgrass prairie Soil Biology and Biochemistry 92 230–238

Mitchell, Elaine, Scheer, Clemens, Rowlings, David W, Conant, Rich T, Cotrufo, Francesca Francesca, van Delden, Lona, Grace, Peter R, (2016) The influence of above-ground residue input and incorporation on GHG fluxes and stable SOM formation in a sandy soil Soil Biology and Biochemistry 101 104–113

Campbell, Eleanor Elizabeth, Parton, William J, Soong, Jennifer L, Paustian, Keith H, Hobbs, Tom Thompson, Cotrufo, Francesca Francesca, (2016) Using litter chemistry controls on microbial processes to partition litter carbon fluxes with the litter decomposition and leaching (LIDEL) model Soil Biology and Biochemistry 100 160–174

Smith, Pete, House, Joanna I., Bustamante, Mercedes, Sobocka, Jaroslava, Harper, Richard, Pan, Genxing, West, Paul C., Clark, Joanna M., Adhya, Tapan, Rumpel, Cornelia, Paustian, Keith H, Kuikman, Peter, Cotrufo, Francesca Francesca, Elliott, Jane A., McDowell, Richard, Griffiths, Robert I., Asakawa, Susumu, Bondeau, Alberte, Jain, Atul K., Meersmans, Jeroen, Pugh, Thomas A. M., (2016) Global change pressures on soils from land use and management GLOBAL CHANGE BIOLOGY 22 3 1008-1028

Soong, Jennifer L, Parton, William J, Calderon, Francisco, Campbell, Eleanor Elizabeth, Cotrufo, Francesca Francesca, (2015) A new conceptual model on the fate and controls of fresh and pyrolized plant litter decomposition Biogeochemistry 124 1-3 27–44

Soong, Jennifer L, Cotrufo, Francesca Francesca, (2015) Annual burning of a tallgrass prairie inhibits C and N cycling in soil, increasing recalcitrant pyrogenic organic matter storage while reducing N availability Global change biology 21 6 2321–2333

Smith, P, Cotrufo, MF, Rumpel, C, Paustian, Keith H, Kuikman, PJ, Elliott, JA, McDowell, R, Griffiths, RI, Asakawa, S, Bustamante, M, others, , (2015) Biogeochemical cycles and biodiversity as key drivers of ecosystem services provided by soils Soil Discussions 2 1 537–586

Shaw, Elisabeth, Denef, Karolien, Milano de Tomasel, Cecilia, Cotrufo, Francesca Francesca, Wall, Diana, (2015) Burning Management in the tallgrass prairie affects root decomposition, soil food web structure and carbon flow Soil Discussion 2 923-953

Cotrufo, Francesca Francesca, Kuikman, Peter, (2015) "Chapter.2.2: Soils and the Nutrient Cycle" FAO

Charteris, AF, Knowles, TDJ, Michaelides, K, Evershed, RP, (2015) Compound-specific 15N stable isotope probing of N assimilation by the soil microbial biomass: a new methodological paradigm in soil N cycling SOIL Discussions 2 1135–1160

Jiang, Xinyu, Denef, Karolien, Stewart, Catherine, Cotrufo, Francesca Francesca, (2015) Controls and dynamics of biochar decay and soil microbial abundance, carbon use efficiency during long-term biochar-amended soil incubations Soil Biology and Biochemistry 10

Jiang, Xinyu, Denef, Karolien, Stewart, Catherine, Cotrufo, Francesca Francesca, (2015) Controls and dynamics of biochar decomposition and soil microbial abundance, composition, and carbon use efficiency during long-term biochar-amended soil incubations. Biology and Fertility of Soils

Boot, CM, Haddix, Michelle, Paustian, Keith H, Cotrufo, MF, (2015) Distribution of black carbon in ponderosa pine forest floor and soils following the High Park wildfire Biogeosciences 12 10 3029–3039

Hüppi, R, Felber, R, Neftel, A, Six, J, Leifeld, J, (2015) Effect of biochar and liming on soil nitrous oxide emissions from a temperate maize cropping system The Soil 1 707–717

Morugán-Coronado, A, García-Orenes, F, Cerdà, A, (2015) Effect of land management on soil properties in flood irrigated citrus orchards in Eastern Spain SOIL Discussions 2 1 1–27

Cotrufo, Francesca Francesca, Soong, Jennifer L, Horton, Andrew J, Campbell, Eleanor Elizabeth, Haddix, Michelle, Wall, Diana H, Parton, William J, (2015) Formation of soil organic matter via biochemical and physical pathways of litter mass loss Nature Geoscience

Cotrufo, Francesca Francesca, Soong, Jennifer L., Horton, Andrew J., Campbell, Eleanor Elizabeth, Haddix, Michelle, Wall, Diana H, Parton, Andwilliam J., (2015) Formation of soil organic matter via biochemical and physical pathways of litter mass loss NATURE GEOSCIENCE 8 10 776-+

Kardanpour, Z, Jacobsen, OS, Esbensen, KH, (2015) Local versus field scale soil heterogeneity characterization–a challenge for representative sampling in pollution studies Soil 1 695–705

Bingham, A, Cotrufo, Francesca Francesca, (2015) Organic nitrogen storage in mineral soil: implications for policy and management Soil Discussions 2 587–618

Cotrufo, Francesca Francesca, Soong, Jennifer, Horton, Andrew, Haddix, Michelle, Campbell, Eleanor, Wall, Diana, Parton, William, (2015) Soil organic matter formation from biochemical and physical pathways of litter mass loss Nature Geosciences

Montanarella, Luca, Pennock, Dan, McKenzie, Neil, Badraoui, Mohamed, Chude, Victor, Costa, Isaurinda Dos Santos Baptista, , Mamo, Tekalign, Yemefack, Martin, Aulakh, Milkha Singh, Yagi, Kazuyuki, others, , (2015) World’s soils are under threat World 2 1263–1272

Cotrufo, Francesca Francesca, Soong, J, Horton, AJ, Campbell, EE, Parton, WJ, (2014) "Above-Ground Litter-Derived C and N Stabilization in SOM: The Key Role of Dissolved Organic Matter Leaching and Litter Fragmentation" 1 01

Gomez, JD, Denef, Karolien, Stewart, CE, Zheng, Jiyong, Cotrufo, Francesca Francesca, (2014) Biochar addition rate influences soil microbial abundance and activity in temperate soils European Journal of Soil Science 65 1 28–39

Jandl, Robert, Rodeghiero, Mirco, Martinez, Cristina, Cotrufo, Francesca Francesca, Bampa, Francesca, van Wesemael, Bas, Harrison, Robert B, Guerrini, Irae Amaral, deB Richter, Daniel, Rustad, Lindsey, others, , (2014) Current status, uncertainty and future needs in soil organic carbon monitoring Science of the Total Environment 468 376–383

Soong, Jennifer L, Reuss, Dan, Pinney, Colin M, Boyack, Ty W, Haddix, Michelle, Stewart, Catherine E, Cotrufo, Francesca Francesca, (2014) Design and operation of a continuous 13C and 15N labeling chamber for uniform or differential, metabolic and structural, plant isotope labeling Journal of visualized experiments: JoVE 83

Fulton-Smith, SE, Cotrufo, MF, (2014) "Digging Deeper: The Importance of Litter Quality and Rooting Depth on Soil Organic Matter Stabilization in Agroecosystems" 1 0059

Lavallee, JM, Cotrufo, MF, Paul, EA, Conant, RT, (2014) "Disentangling controls on mineral-stabilized soil organic matter using a slurry incubation" 1 0080

Zhu, Xudong, Tang, Jing, Riley, WJ, Wallenstein, MD, Cotrufo, MF, Machmuller, MB, Lynch, Laurel, (2014) "Evaluation of a Thermodynamically Based Soil Microbial Decomposition Model Based on a 13c Tracer Study in Arctic Tundra Soils" 1 0048

Soong, Jennifer, Cotrufo, MF, (2014) "Frequent burning of a tallgrass prairie increases soil C and N storage as pyrogenic organic matter, while reducing N availability" 1 0066

Soong, Jennifer, Parton, William J, Calderon, Francisco, Guilbert, Kathleen, Campbell, Nell, Cotrufo, Francesca Francesca, (2014) "From litter decomposition to soil organic matter formation: using leaf traits to predict dissolved organic carbon leaching" 16 935

Cotrufo, Francesca Francesca, Soong, Jennifer, Vandegehuchte, Martijn L, Nguyen, Trung, Denef, Karolien, Shaw, Elizabeth Ashley, Sylvain, Zachary A, de Tomasel, Cecilia Milano, Nielsen, Uffe N, Wall, Diana H, (2014) Naphthalene addition to soil surfaces: a feasible method to reduce soil micro-arthropods with negligible direct effects on soil C dynamics Applied Soil Ecology 74 21–29

Cotrufo, Francesca Francesca, Soong, Jennifer, Vandegehuchte, Martijn L., Trung Nguyen, , Denef, Karolien, Shaw, Elizabeth Ashley, Sylvain, Zachary A., de Tomasel, Cecilia Milano, , Nielsen, Uffe N., Wall, Diana H, (2014) Naphthalene addition to soil. surfaces: A feasible method to reduce soil micro-arthropods with negligible direct effects on soil C dynamics APPLIED SOIL ECOLOGY 74 21-29

Soong, Jennifer L, Calderón, Francisco J, Betzen, Jacob, Cotrufo, Francesca Francesca, (2014) Quantification and FTIR characterization of dissolved organic carbon and total dissolved nitrogen leached from litter: a comparison of methods across litter types Plant and soil 385 1-2 125–137

Cotrufo, Francesca Francesca, Fulton-Smith, Sarah Elizabeth, Haddix, ML, Horton, AJ, Soong, J, (2014) "Recalcitrance: An Inherent Relative Attribute of Plant Litter Describing Its Potential Decomposability" 1 01

Campbell, EE, Parton, WJ, Soong, J, Cotrufo, MF, Paustian, Keith H, (2014) "The Litter Decomposition and Leaching (LIDEL) model: modeling plant litter decomposition to CO2, dissolved organic matter and microbial products through nitrogen and lignin controls on microbial carbon use efficiency" 1 08

Boot, CM, Cotrufo, MF, Haddix, ML, Schmeer, Sarah Renee, Kampf, SK, Brogan, DJ, Nelson, PA, Rhoades, C, Ryan, SE, Rathburn, SL, others, , (2014) "Transport of Black Carbon Across the Terrestrial-Aquatic Interface Following Wildfire: Contributions of Short and Long-term Controls" 1 L06

Soong, , Calderon, , Betzen, , Cotrufo, Francesca Francesca, (2014) Quantifying and FTIR characterizing dissolved organic carbon and total dissolved nitrogen leaching from litter: a comparison of methods across litter types Plant and Soil 385 125-137

Cotrufo, Francesca Francesca, (2014) "Global Change and Terrestrial Ecosystems, Introduction" Springer-Verlag Berlin Heidelberg

Alberti, G, Vicca, S, Inglima, I, Belelli-Marchesini, L, Genesio, L, Miglietta, F, Marjanovic, H, Martinez, C, Matteucci, G, D'Andrea, E, Peressotti, A, Petrella, F, Rodeghiero, M, Cotrufo, Francesca Francesca, (2014) Soil C:N stoichiometry controls carbon sink partitioning between above-ground tree biomass and soil organic matter in high fertility forests E-forest

Boot, Claudia, Haddix, Michelle, Paustian, Keith H, Cotrufo, Francesca Francesca, (2013) "ACCOUNTING FOR PYROGENIC CARBON STOCKS IN THE CACHE LA POUDRE WATERSHED FOLLOWING THE HIGH PARK FIRE"

Karolien, Denef, Ilaria Del, Galdo, Andrea, Venturi, M Francesca, Cotrufo, (2013) Assessment of soil C and N stocks and fractions across 11 European soils under varying land uses Open Journal of Soil Science 2013

Ashley, Shaw E, Cotrufo, MF, Wall, DH, (2013) "BIOMASS ESTIMATES OF NEMATODE SOIL ENERGY CHANNELS INDICATE CARBON FLOW FOR DECOMPOSITION STUDIES" 45 4 316–317

Stewart, Catherine E, Zheng, Jiyong, Botte, Jorin, Cotrufo, Francesca Francesca, (2013) Co-generated fast pyrolysis biochar mitigates green-house gas emissions and increases carbon sequestration in temperate soils GCB Bioenergy 5 2 153–164

Field, John L, Keske, Catherine MH, Birch, Greta L, DeFoort, Morgan W, Cotrufo, Francesca Francesca, (2013) Distributed biochar and bioenergy coproduction: a regionally specific case study of environmental benefits and economic impacts GCB Bioenergy 5 2 177–191

Battipaglia, Giovanna, Saurer, Matthias, Cherubini, Paolo, Calfapietra, Carlo, McCarthy, Heather R, Norby, Richard J, Francesca Cotrufo, M, (2013) Elevated CO2 increases tree-level intrinsic water use efficiency: insights from carbon and oxygen isotope analyses in tree rings across three forest FACE sites New Phytologist 197 2 544–554

Soong, J, Parton, WJ, Calderon, FJ, Guilbert, K, Cotrufo, Francesca Francesca, (2013) "Quantifying litter decomposition losses to dissolved organic carbon and respiration" 1 0275

Cotrufo, Francesca Francesca, Alberti, G, Vicca, S, Inglima, I, Belelli-Marchesini, L, Genesio, L, Miglietta, F, Marjanovic, H, Martinez, Caitlyn Marisa Romero, Matteucci, G, others, , (2013) "Soil C: N stoichiometry controls carbon sink partitioning between above-ground tree productivity and soil organic matter in high fertility forests" 1 0476

Cotrufo, Francesca Francesca, Wallenstein, Matthew, Boot, Claudia, Denef, Karolien, Paul, Eldor A, (2013) The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter? Global Change Biology 19 4 988–995

Gomez, David , Denef, Karolien, Stewart, Catherine, Zheng, Jiuong, Cotrufo, Francesca Francesca, (2013) Biochar addition rate controls soil microbial abundance and activity in temperate soils European Journal of Soil Sciences Doi:10.1111/ejss.12097

Fulton-Smith, Sarah, Jahn, Courtney Elaine, Cotrufo, Francesca Francesca, (2013) "Exploring the Potential for Biofuel Crops to Sequester Carbon in the Deep Soil" Colorado Center for Biorefining and Biofuels

Stewart, Catherine, Zheng, Jioung, Botte, Jorin, Cotrufo, Francesca Francesca, (2013) Biochar co-generated by fast pyrolysis for bio-oil production is a valuable tool to mitigate green-house gas emissions and increase carbon sequestration in temperate soils Global Change Biology Bioenergy 5 153-164

Field, John, Keske, Catherine, Birch, Greta, DeFoort, Morgan, Cotrufo, Francesca Francesca, (2013) Distributed biochar and bioenergy coproduction: a regionally specific case study of environmental benefits and economic impacts Global Change Biology, Bioenergy 5 177-191

Battipaglia, Giovanna, Saurer, Matthia, Cherubini, Paolo, Calfapietra, Carlo, McCarthy, H. R., Norby, Rich, Cotrufo, Francesca Francesca, (2013) Elevated CO2 increases tree-level intrinsic water use efficiency: insights from carbon and oxygen New Phytologist 197 544–554

Cotrufo, Francesca Francesca, Wallenstein, Matthew, Boot, Claudia, Denef, Karolien, Paul, Eldor, (2013) The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: Do labile plant inputs form stable soil organic matter? Invited Opinion Global Change Biology 19 988-995

Birch, G, Field, John L, Keske, C, DeFoort, M, Cotrufo, Francesca Francesca, (2012) "A Regionally-Specific Assessment of the Carbon Abatement Potential of Biochar" 1 0554

Keys, PW, Van der Ent, RJ, Gordon, LJ, Hoff, Holger, Nikoli, R, Savenije, HHG, (2012) Analyzing precipitationsheds to understand the vulnerability of rainfall dependent regions Biogeosciences, 9 (2), 2012

Zheng, Jiyong, Stewart, Catherine E, Cotrufo, Francesca Francesca, (2012) Biochar and nitrogen fertilizer alters soil nitrogen dynamics and greenhouse gas fluxes from two temperate soils Journal of environmental quality 41 5 1361–1370

Guilbert, K, Soong, J, Cotrufo, Francesca Francesca, (2012) "Developing Classroom Research Modules Through In Depth Understanding of the Research Process" 1 0769

Cotrufo, Francesca Francesca, Wallenstein, MD, Boot, CM, Denef, Karolien, Paul, Eldor A, (2012) "The Dual Filter Model: Labile Plant Inputs Form Stable Soil Organic Matter" 1 06

Shaw, Elizabeth Ashley, Denef, Karolien, Cotrufo, MF, Wall, DH, (2012) "TRACING CARBON FLOW THROUGH THE SOIL NEMATODE FOOD WEB: DO LONG-TERM BURNING PRACTICES AFFECT CARBON TROPHIC DYNAMICS IN THE TALLGRASS PRAIRIE?" 44 4 490–491

Cotrufo, Francesca Francesca, Soong, J, Horton, A, Nielsen, U, Denef, Karolien, Parton, WJ, Wall, DH, (2011) "An integrated experimental and modeling study to advance process understanding and forecasting of C and N fluxes from the litter layer to the soil and the atmosphere" 1 0230

Jiyong, Zheng, Stewart Catherine, E, Francesca, Cotrufo M, others, , (2011) Biochar effects on extractable NO (3)(-) and NH (4)(+) and greenhouse gas flux after biochar and fertilizer application to two temperate soils

Soong, J, Nielsen, U, Denef, Karolien, Parton, WJ, Wall, DH, Cotrufo, Francesca Francesca, (2011) "Biological mechanisms controlling atmospheric loss vs. belowground storage of decomposing litter: a stable isotope approach" 1 07

Ngao, Jérome, Cotrufo, Maria-Francesca, (2011) Carbon isotope discrimination during litter decomposition can be explained by selective use of substrate with differing $δ$ 13 C!!! Biogeosciences Discussions 8 1 51–82

Cotrufo, MF, Alberti, Giorgio, Inglima, I, Marjanovic, H, LeCain, D, Zaldei, A, Peressotti, A, Miglietta, F, (2011) Decreased summer drought affects plant productivity and soil carbon dynamics in Mediterranean woodland Biogeosciences 8 2729–2739

Stewart, Catherine, Zheng, Jiyong, Cotrufo, Francesca Francesca, (2011) "Impact of biochar addition rate and soil type on greenhouse gas emissions: The importance of long-term data" 242

Cotrufo, Francesca Francesca, Conant, Rich T, Paustian, Keith H, (2011) Soil organic matter dynamics: land use, management and global change Plant and soil 338 1 1–3

Rubino, Mauro, Dungait, JAJ, Evershed, RP, Bertolini, T, De Angelis, P, D’Onofrio, A, Lagomarsino, A, Lubritto, C, Merola, A, Terrasi, F, others, , (2010) Carbon input belowground is the major C flux contributing to leaf litter mass loss: evidences from a 13 C labelled-leaf litter experiment Soil Biology and Biochemistry 42 7 1009–1016

Marzaioli, Fabio, Lubritto, Carmine, Del Galdo, Ilaria, D’Onofrio, Antonio, Cotrufo, Francesca Francesca, Terrasi, Filippo, (2010) Comparison of different soil organic matter fractionation methodologies: Evidences from ultrasensitive 14 C measurements Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms 268 7 1062–1066

Cotrufo, Francesca Francesca, Ngao, Jerome, Marzaioli, Fabio, Piermatteo, Daniela, (2010) Inter-comparison of methods for quantifying above-ground leaf litter decomposition rates Plant and soil 334 1-2 365–376

Battipaglia, Giovanna, Marzaioli, Fabio, Lubritto, Carmine, Altieri, Simona, Strumia, Sandro, Cherubini, Paolo, Cotrufo, Francesca Francesca, (2010) Traffic pollution affects tree-ring width and isotopic composition of Pinus pinea Science of the total Environment 408 3 586–593

Battipaglia, G, Lubritto, C, Altieri, S, Marzaioli, F, Cherubini, P, Cotrufo, MF, (2009) "Ecophysiological responses of trees to long-term N deposition: a multi isotopes approach" 11 10009

Lukac, Martin, Lagomarsino, Alessandra, Moscatelli, M Cristina, De Angelis, Paolo, Cotrufo, Francesca Francesca, Godbold, Douglas L, (2009) Forest soil carbon cycle under elevated CO2–a case of increased throughput? Forestry 82 1 75–86

Castaldi, Simona, Carfora, Anna, Fiorentino, Antonio, Natale, Angela, Messere, Anna, Miglietta, Franco, Cotrufo, Francesca Francesca, (2009) Inhibition of net nitrification activity in a Mediterranean woodland: possible role of chemicals produced by Arbutus unedo Plant and Soil 315 1-2 273–283

Rubino, Mauro, Lubritto, C, D’Onofrio, A, Terrasi, F, Kramer, C, Gleixner, G, Cotrufo, MF, (2009) Isotopic evidences for microbiologically mediated and direct C input to soil compounds from three different leaf litters during their decomposition Environmental chemistry letters 7 1 85–95

Cotrufo, Francesca Francesca, Del Galdo, Ilaria, Piermatteo, Daniela, (2009) Litter decomposition: concepts, methods and future perspectives Soil carbon dynamics: an integrated methodology. Cambridge University Press, Cambridge 76–90

Inglima, I, Alberti, G, Bertolini, T, Vaccari, FP, Gioli, B, Miglietta, F, Cotrufo, MF, Peressotti, A, (2009) Precipitation pulses enhance respiration of Mediterranean ecosystems: the balance between organic and inorganic components of increased soil CO2 efflux Global Change Biology 15 5 1289–1301

Inglima, Ilaria, Papale, Dario, Lecain, Daniel, Miglietta, Franco, Cotrufo, Francesca Francesca, (2009) "Quantification of net annual C input in terrestrial ecosystems of the Italian Peninsula under different land-uses"

Sutton, MA, Nemitz, E, Reis, S, Beier, C, Butterbach-Bahl, K, Cellier, P, Cotrufo, Francesca Francesca, Erisman, J, Skiba, U, de Vries, W, others, , (2009) "Quantifying nitrogen fluxes and their influence on the greenhouse gas balance-recent findings of the NitroEurope Integrated Project" 1 02

Kutsch, Werner L, Bahn, M, Heinemeyer, A, (2009) "Soil carbon relations: an overview" Cambridge Univ. Press 1–15

Battipaglia, Giovanna, Saurer, Matthias, Cherubini, Paolo, Siegwolf, Rolf TW, Cotrufo, Francesca Francesca, (2009) Tree rings indicate different drought resistance of a native (Abies alba Mill.) and a nonnative (Picea abies (L.) Karst.) species co-occurring at a dry site in Southern Italy Forest Ecology and Management 257 3 820–828

Marzaioli, F, Lubritto, C, Galdo, I DEL, D’Onofrio, A, Cotrufo, MF, Terrasi, F, (2008) AMS C measurements in soil organic matter: studying carbon dynamics under global change. Contribute talk at the 11th AMS conference.

Battipaglia, Giovanna, Jäggi, Maya, Saurer, Matthias, Siegwolf, Rolf TW, Cotrufo, Francesca Francesca, (2008) Climatic sensitivity of $δ$ 18 O in the wood and cellulose of tree rings: Results from a mixed stand of Acer pseudoplatanus L. and Fagus sylvatica L.!!! Palaeogeography, Palaeoclimatology, Palaeoecology 261 1 193–202

Cotrufo, Francesca Francesca, Piermatteo, Daniela, Marzaioli, Fabio, Ngao, Jerome, (2008) "COS 110-1: Leaf litter decomposition process in forest ecosystem: A comparison of methods"

Altieri, S, Lubritto, C, Battipaglia, G, Capano, M, Sirignano, C, Marzaioli, F, Strumia, S, Cotrufo, Mf, (2008) Impact of a road on Pinus Pinea and Quercus robur tree growth as revealed by tree-ring width and C and N isotope analyses

Ineson, Phil, Cotrufo, MF, Raschi, A, Miglietta, F, Tognetti, R, van Gardingen, PR, others, , (2008) Increasing concentrations of atmospheric CO2 and decomposition processes in forest ecosystems. Plant responses to elevated CO2: evidence from natural springs 242–267

Battipaglia, G, Marzaioli, F, Altieri, S, Lubritto, C, Strumia, S, Cotrufo, Mf, (2008) "Multi isotope approach as a promising tool to investigate the impact of anthropogenic nitrogen pollutants released in the atmosphere" 1 15–17

Sutton, M, Nemitz, E, Reis, S, Beier, C, Butterbach-Bahl, K, Cellier, P, Cotrufo, MF, Erisman, JW, Skiba, UM, de Vries, W, others, , (2008) "Quantifying Nitrogen Fluxes and Their Influence on the Greenhouse gas Balance-Research Strategy and new Findings From the NitroEurope Integrated Project" 1 07

Marzaioli, F, Lubritto, C, Del Galdo, I, D’Onofrio, A, Cotrufo, Francesca Francesca, Terrasi, F, (2008) "Soil Organic Matter Mean Residence Time Measurement: Characterization of Analyitical and Numerical Approaches for the Bombspike Model Resolution" 1 03

Magnani, F, Cotrufo, MF, Peressotti, A, Valentini, R, Borghetti, M, Miglietta, F, (2008) "The response of terrestrial ecosystems to drought extremes" 10

Battipaglia, G, Siegwolf, Trw, Saurer, M, Frank, D, Cherubini, P, Norby, R, Oren, R, Maglietta, F, Cotrufo, Mf, (2008) Using tree-ring $δ$13C, $δ$18O and width data to assess the growth, photosynthetic, and stomatal response of forest exposed to elevated CO2!!!

Natale, A, Fiorentino, A, Castaldi, S, Canfora, A, D’Abrosca, B, Messere, A, Miglietta, F, Cotrufo, MF, (2007) "Allelophatic inhibitors of soil nitrification from Arbutus unedo living in a monospecific Mediteranean woodland" 191–191

Rubino, Mauro, Lubritto, C, D’Onofrio, A, Terrasi, F, Gleixner, G, Cotrufo, MF, (2007) An isotopic method for testing the influence of leaf litter quality on carbon fluxes during decomposition Oecologia 154 1 155–166

Alberti, G, Inglima, I, Arriga, N, Piermatteo, D, Pecchiari, M, Zaldei, A, Papale, D, Peressotti, A, Valentini, R, Cotrufo, MF, others, , (2007) Cambiamenti nel regime pluviometrico in ecosistemi mediterranei: il progetto MIND Forest@-Journal of Silviculture and Forest Ecology 4 4 460

Alberti, G, Inglima, I, Arriga, N, Piermatteo, D, Pecchiari, M, Zaldei, A, Papale, D, Peressotti, A, Valentini, R, Cotrufo, MF, others, , (2007) Changes in rainfall patterns in Mediterranean ecosystems: the MIND project Forest@

Calfapietra, Carlo, De Angelis, Paolo, Gielen, Birgit, Lukac, Martin, Moscatelli, Maria Cristina, Avino, Giuseppina, Lagomarsino, Alessandra, Polle, Andrea, Ceulemans, Reinhart, Mugnozza, Giuseppe Scarascia, others, , (2007) Increased nitrogen-use efficiency of a short-rotation poplar plantation in elevated CO2 concentration Tree Physiology 27 8 1153–1163

Hyvönen, Riitta, Ågren, Göran I, Linder, Sune, Persson, Tryggve, Cotrufo, Francesca Francesca, Ekblad, Alf, Freeman, Michael, Grelle, Achim, Janssens, Ivan A, Jarvis, Paul G, others, , (2007) The likely impact of elevated [CO2], nitrogen deposition, increased temperature and management on carbon sequestration in temperate and boreal forest ecosystems: a literature review New Phytologist 173 3 463–480

Wallenstein, Matthew, Denef, Karolien, Boot, Claudia, Cotrufo, Francesca Francesca, Paul, Eldor A, (2007) The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter? Colorado State University. Libraries

Battipaglia, G, Saurer, M, Siegwolf, Trw, Cotrufo, Mf, (2007) "The response of photosynthesis and stomatal conductance of forest trees exposed to elevated CO2: $δ$13C and $δ$18O tree ring analysis!!!"

Gianelle, D, Miglietta, F, Corona, P, Marchetti, M, Magnani, F, Peressotti, A, Cotrufo, Francesca Francesca, Castaldi, S, Ciccioli, P, Vannini, A, others, , (2007) Transparency and Kyoto Protocol: reply to Mollicone and Federici Forest@

Valentini, R, Miglietta, F, Scarascia Mugnozza, G, Corona, P, Marchetti, M, Magnani, F, Peressotti, A, Cotrufo Maria, F, Castaldi, S, Ciccioli, P, others, , (2007) Trasparenza e protocollo di Kyoto: risposta a Mollicone e Federici Forest@-Journal of Silviculture and Forest Ecology 4 2 153

Battipaglia, Giovanna, Cherubini, Paolo, Saurer, Matthias, Siegwolf, Rolf TW, Strumia, Sandro, Francesca Cotrufo, M, (2007) Volcanic explosive eruptions of the Vesuvio decrease tree-ring growth but not photosynthetic rates in the surrounding forests Global Change Biology 13 6 1122–1137

Cotrufo, Francesca Francesca, Del Galdo, I, Marzaioli, F, Rubino, M, Terrasi, F, (2006) "Carbon Stocks in Physically-Protected Soil Organic Matter Pools of European Forests, Grasslands and Arable Lands" 1 04

Del Galdo, I, Rubino, M, Mastroianni, G, Cotrufo, MF, (2006) "Carbon stocks in soil organic matter fractions, separated by size and density, of the CARBOEUROPE site network" 8 07784

SUBKE, JENS-ARNE, Inglima, Ilaria, Francesca Cotrufo, M, (2006) CORRIGENDUM Global Change Biology 12 9 1813–1813

Battipaglia, G, Miglietta, F, Siegwolf, Trw, Cotrufo, Mf, (2006) Dendro Studies in FACE systems ATTI DELLA SOCIETÀ ITALIANA DI ECOLOGIA 119

Del Galdo, Ilaria, Oechel, Walter C, Cotrufo, Francesca Francesca, (2006) Effects of past, present and future atmospheric CO 2 concentrations on soil organic matter dynamics in a chaparral ecosystem Soil Biology and Biochemistry 38 11 3235–3244

Battipaglia, G, Strumia, S, Cherubini, P, Saurer, M, Siegwolf, R, Cotrufo, Mf, (2006) Effetti delle eruzioni del Vesuvio sulla crescita e l’ecofisiologia delle foreste circostanti. Evidenze dagli anelli di accrescimento annuali delle piante BOLLETTINO DEI MUSEI E DEGLI ISTITUTI BIOLOGICI DELL’UNIVERSITÀ DI GENOVA 101 194

Inglima, Ilaria, Rubino, M, Cotrufo, MF, (2006) "Mediterranean forest ecosystem under changing precipitation regimes: the responses of soil respiration" 8 08237

Godbold, Douglas L, Hoosbeek, Marcel R, Lukac, Martin, Cotrufo, Francesca Francesca, Janssens, Ivan A, Ceulemans, Reinhart, Polle, Andrea, Velthorst, Eef J, Scarascia-Mugnozza, Giuseppe, De Angelis, Paolo, others, , (2006) Mycorrhizal hyphal turnover as a dominant process for carbon input into soil organic matter Plant and Soil 281 1-2 15–24

Cotrufo, Francesca Francesca, (2006) Quantity of standing litter: a driving factor of root dynamics Plant and soil 281 1-2 1–3

Scarascia-Mugnozza, G, Calfapietra, C, Ceulemans, R, Gielen, B, Cotrufo, MF, DeAngelis, P, Godbold, D, Hoosbeek, MR, Kull, O, Lukac, M, others, , (2006) "Responses to elevated [CO2] of a short rotation, multispecies poplar plantation: the POPFACE/EUROFACE experiment" Springer Berlin Heidelberg 173–195

Bertolini, Teresa, Inglima, Ilaria, Rubino, Mauro, Marzaioli, Fabio, Lubritto, Carmine, Subke, Jens-Arne, Peressotti, Alessandro, Cotrufo, Francesca Francesca, (2006) Sampling soil-derived CO2 for analysis of isotopic composition: a comparison of different techniques Isotopes in environmental and health studies 42 1 57–65

Cherubini, P, Battipaglia, G, Saurer, M, Siegwolf, S, Cotrufo, Mf, (2006) "The impact of Vesuvio’s eruption on the growth and physiology of surrounding trees"

SUBKE, JENS-ARNE, Inglima, Ilaria, Francesca Cotrufo, M, (2006) Trends and methodological impacts in soil CO2 efflux partitioning: a metaanalytical review Global Change Biology 12 6 921–943

Bertolini, Teresa, Inglima, Ilaria, Cotrufo, Francesca Francesca, (2005) Land use effects on microclimate in a managed oak forest

Cotrufo, Francesca Francesca, De Angelis, Paolo, Polle, Andrea, (2005) Leaf litter production and decomposition in a poplar short-rotation coppice exposed to free air CO2 enrichment (POPFACE) Global Change Biology 11 6 971–982

Gielen, Birgit, Calfapietra, C, Lukac, M, Wittig, VE, De Angelis, P, Janssens, IA, Moscatelli, MC, Grego, S, Cotrufo, MF, Godbold, DL, others, , (2005) Net carbon storage in a poplar plantation (POPFACE) after three years of free-air CO2 enrichment Tree Physiology 25 11 1399–1408

Cotrufo, Francesca Francesca, Drake, Bert, Ehleringer, James R, (2005) Palatability trials on hardwood leaf litter grown under elevated CO 2: a stable carbon isotope study Soil Biology and Biochemistry 37 6 1105–1112

Marzaioli, Fabio, Rubino, Mauro, (2005) RECONSTRUCTION OF PAST CO2 CONCENTRATION AT A NATURAL CO2 VENTSITE USING RADIOCARBON DATING OF TREE RINGS Radiocarbon 47 2

Subke, Jens-Arne, Inglima, Ilaria, Peressotti, Alessandro, Delle Vedove, Gemini, Cotrufo, Francesca Francesca, (2004) A new technique to measure soil CO 2 efflux at constant CO 2 concentration Soil Biology and Biochemistry 36 6 1013–1015

Gianfrani, L, Rocco, A, Battipaglia, G, Castrillo, A, Gagliardi, G, Peressotti, A, Cotrufo, MF, (2004) Assessing soil respiration by means of near-infrared diode laser spectroscopy Applied spectroscopy 58 9 1051–1056

Subke, Jens-Arne, Hahn, Volker, Battipaglia, Giovanna, Linder, Sune, Buchmann, Nina, Cotrufo, Francesca Francesca, (2004) Feedback interactions between needle litter decomposition and rhizosphere activity Oecologia 139 4 551–559

Cotrufo, MF, Delle Vedove, G, Subke, JA, Inglima, I, Alberti, G, Peressotti, A, (2004) Litter decomposition and soil CO2 efflux on the Mediterranean island of Pianosa Journal of Mediterranean Ecology 5 1

Scarascia-Mugnozza, G, Calfapietra, C, Gielen, B, de Angelis, P, Liberloo, M, Lukac, M, Godbold, D, Cotrufo, MF, Hoosbeek, MR, Taylor, Gerald D, others, , (2004) Long-term responses of a poplar agroforestry system to elevated CO2: tree growth, biomass productivity and carbon pools

Hoosbeek, Marcel R, Lukac, Martin, van Dam, Douwe, Godbold, Douglas L, Velthorst, Eef J, Biondi, Francesco A, Peressotti, Alessandro, Cotrufo, Francesca Francesca, de Angelis, Paolo, Scarascia-Mugnozza, Giuseppe, (2004) More new carbon in the mineral soil of a poplar plantation under Free Air Carbon Enrichment (POPFACE): cause of increased priming effect? Global biogeochemical cycles 18 1

Colom, MR, Vaccari, FP, Scartazza, A, Brugnoli, E, Zerbi, G, Sforzi, S, Baraldi, R, Cotrufo, MF, D’Acqui, L, Santi, C, others, , (2004) Pianosa Island: structure, functioning and biodiversity of main ecosystems Journal of Mediterranean Ecology 5 1 31–40

Baraldi, R, Vaccari, FP, Colom, MR, Cotrufo, MF, D’Acqui, LP, (2004) The Pianosa_LAB: an integrated research project to assess the carbon balance of Pianosa Island Journal of Mediterranean Ecology 5 1 5–13

Del Galdo, Ilaria, Six, Johan, Peressotti, Alessandro, Francesca Cotrufo, M, (2003) Assessing the impact of land-use change on soil C sequestration in agricultural soils by means of organic matter fractionation and stable C isotopes Global change biology 9 8 1204–1213

Subke, Ja, Hahn, V, Battipaglia, G, Linder, S, Buchmann, N, Cotrufo, Mf, (2003) "Complex interaction between litter decomposition and rhizosphere activity revealed by novel experimental approach"

Battipaglia, G, D’Ambrosio, B, Strumia, S, Cotrufo, Mf, (2003) Tree rings stable C isotopes as indicators of climatic change in the Mediterranean basin.

Sabbarese, C, Stellato, L, Cotrufo, MF, D’Onofrio, Antonio, Ermice, A, Lubritto, Carmine, Terrasi, F, Alfieri, S, Migliore, G, (2002) Dependence of radionuclide transfer factor on growth stage for a soil-lettuce plant system Environmental Modelling & Software 17 6 545–551

Subke, J, Hahn, V, Battipaglia, G, Linder, S, Buchmann, N, Cotrufo, Francesca Francesca, (2002) "Identifying Interactions Between Rhizosphere Activity and Leaf Litter Decomposition-a Novel Approach" 1 0756

Calabritto, F, Del Galdo, I, De Angelis, P, Ball, AS, Coppola, E, Strumia, S, Cotrufo, MF, (2002) Long-term responses to elevated CO 2 of the soil environment in a Mediterranean Macchia ecosystem Journal of Mediterranean Ecology 3 23–28

Battipaglia, G, Rocco, A, Castrillo, A, Gagliardi, G, Peressotti, A, Gianfrani, L, Cotrufo, Mf, (2002) Nuove prospettive per le misure di flussi di CO2 fra suolo e atmosfera in sistemi chiusi ATTI DELLA SOCIETÀ ITALIANA DI ECOLOGIA 14

Sabbarese, C, Terrasi, F, D’Onofrio, A, Stellato, L, Lubritto, C, Ermice, A, Cotrufo, MF, Alfieri, S, Migliore, G, (2002) "Radionuclide transfer from soil to agricultural plants: measurements and modelling"

Sabbarese, C, Stellato, L, Cotrufo, MF, D’Onofrio, A, Ermice, A, Terrasi, F, Alfieri, S, (2002) Transfer of 137 Cs and 60 Co from irrigation water to a soil–tomato plant system Journal of environmental radioactivity 61 1 21–31

Rubino, M, Battipaglia, G, Lubritto, C, D’Onofrio, A, Terrasi, F, Cotrufo, Mf, (2002) Uso degli isotopi stabili del C per la quantificazione dei flussi di C coinvolti nel processo di decomposizione ATTI DELLA SOCIETÀ ITALIANA DI ECOLOGIA 54

Cotrufo, Francesca Francesca, Peressotti, A, Del Galdo, I, Six, J, (2001) "Assessing the Impact of Land-use on Soil C Sequestration by Means of Soil Organic Matter Fractionation and Stable C Isotopes" 1 0106

Norby, Richard J, Cotrufo, Francesca Francesca, Ineson, Philip, O’Neill, Elizabeth G, Canadell, Josep G, (2001) Elevated CO2, litter chemistry, and decomposition: a synthesis Oecologia 127 2 153–165

Battipaglia, G, Strumia, S, Cotrufo, MF, (2001) "Monitoraggio della diversità floristica e dello stato del suolo in un sistema costiero mediterraneo" 25 75–96

Battipaglia, G, Strumia, S, Cotrufo, Mf, (2001) Monitoring of floristic diversity and state of soil in a Mediterranean ecosystem BOLLETTINO DEI MUSEI E DEGLI ISTITUTI BIOLOGICI DELL’UNIVERSITÀ DI GENOVA

Gorissen, A, Cotrufo, MF, (2000) Decomposition of leaf and root tissue of three perennial grass species grown at two levels of atmospheric CO2 and N supply Plant and Soil 224 1 75–84

Cotrufo, Francesca Francesca, Ineson, Phil, (2000) Does elevated atmospheric CO2 concentrations affect wood decomposition? Plant and Soil 224 1 51–57

Cotrufo, ME, Miller, Morten, Zeller, B, (2000) "Litter decomposition" Springer Berlin Heidelberg 276–296

Cotrufo, MF, Raschi, A, Lanini, M, Ineson, Phil, (1999) Decomposition and nutrient dynamics of Quercus pubescens leaf litter in a naturally enriched CO2 Mediterranean ecosystem Functional Ecology 13 3 343–351

Gorissen, A, Cotrufo, MF, (1999) Elevated carbon dioxide effects on nitrogen dynamics in grasses, with emphasis on rhizosphere processes Soil Science Society of America Journal 63 6 1695–1702

Cotrufo, Francesca Francesca, Ineson, Phil, Scott, AndY, (1998) Elevated CO2 reduces the nitrogen concentration of plant tissues Global Change Biology 4 1 43–54

Norby, Richard J, Cotrufo, Francesca Francesca, (1998) Global change: a question of litter quality Nature 396 6706 17–18

Cotrufo, Francesca Francesca, Berg, Björn, Kratz, Werner, (1998) Increased atmospheric CO2 and litter quality Environmental Reviews 6 1 1–12

Cotrufo, MF, Gorissen, A, (1997) Elevated CO2 enhances below-ground C allocation in three perennial grass species at different levels of N availability New Phytologist 137 3 421–431

Cotrufo, MF, Ineson, Paul, (1996) Elevated CO2 reduces field decomposition rates of Betula pendula (Roth.) leaf litter Oecologia 106 4 525–530

Cotrufo, Francesca Francesca, Ineson, Phil, Roberts, J Derek, (1995) Decomposition of birch leaf litters with varying C-to-N ratios Soil Biology and Biochemistry 27 9 1219–1221

Cotrufo, MF, Ineson, Phil, (1995) Effects of enhanced atmospheric CO2 and nutrient supply on the quality and subsequent decomposition of fine roots of Betula pendula Roth. and Picea sitchensis (Bong.) Carr. Plant and Soil 170 2 267–277

Ineson, Phil, Cotrufo, Francesca Francesca, Bol, Roland, Harkness, Douglas D, Blum, Herbert, (1995) Quantification of soil carbon inputs under elevated CO2: C3 plants in a C4 soil Plant and Soil 187 2 345–350

Cotrufo, MF, Ineson, Phil, Rowland, AP, (1994) Decomposition of tree leaf litters grown under elevated CO2: effect of litter quality Plant and Soil 163 1 121–130

Cotrufo, Francesca Francesca, (1994) "Effects of enriched atmospheric concentration of carbon dioxide on tree litter decomposition." University of Lancaster

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