Hanna, JW, Mulvey, RL, Kim, M-S, Stewart, JE, Bright, BC, Warwell, MV, Klopfenstein, NB, (2020) "Bioclimatic modeling of Armillaria species in southeastern Alaska, including potentially invasive Armillaria species under changing climate" 171--176

Copes, Warren E, Caballero, Jorge Ibarra, Babiker, Ebrahiem, Stewart, Jane E, Orner, Valerie A, Windham, Alan S, Arias, Renee S, (2020) Draft genome assembly of Passalora sequoiae a needle blight pathogen on Leyland cypress BMC Research Notes 13 1 1--5

Caballero, Jorge R Ibarra, Ata, Jessa, Leddy, KA, Glenn, Travis C, Kieran, Troy J, Klopfenstein, Ned B, Kim, Mee-Sook, Stewart, Jane E, (2020) Genome comparison and transcriptome analysis of the invasive brown root rot pathogen, Phellinus noxius, from different geographic regions reveals potential enzymes associated with degradation of different wood substrates Fungal Biology 124 2 144--154

Dudley, MM, Tisserat, NA, Jacobi, WR, Negr\'on, J, , Stewart, JE, (2020) Pathogenicity and distribution of two species of Cytospora on Populus tremuloides in portions of the Rocky Mountains and midwest in the United States Forest Ecology and Management 468 118168

Stewart, JE, Kim, M-S, Ota, Y, Sahashi, N, Hanna, JW, Akiba, M, Ata, JP, Atibalentja, N, Brooks, F, Chung, C-L, others, , (2020) Phylogenetic and population genetic analyses reveal three distinct lineages of the invasive brown root-rot pathogen, Phellinus noxius, and bioclimatic modeling predicts differences in associated climate niches European Journal of Plant Pathology 1--16

Stewart, Jane E, Harris, Franklin L, Otto, Kristen, Davis, Thomas Seth, (2020) Responses of Engelmann spruce to inoculation with Leptographium abietinum, a symbiotic fungus of the North American spruce beetle Canadian Journal of Forest Research 50 5 465--472

Lalande, Bradley M, Hughes, Kristina, Jacobi, William R, Tinkham, Wade T, Reich, Robin M, Stewart, Jane E, (2020) Subalpine fir mortality in Colorado is associated with stand density, warming climates and interactions among fungal diseases and the western balsam bark beetle Forest Ecology and Management 466 118133

Hanna, JW, Warwell, MV, Sitz, RA, Guyon, JC, Hebertson, EG, Saavedra, AL, Blodgett, JT, Kim, M-S, Stewart, JE, Ashiglar, SM, others, , (2020) "Toward DNA-based and bioclimatic modeling tools to identify Armillaria pathogens, predict host/pathogen distributions, and manage Armillaria root disease in the Intermountain Region under changing environments" 177--182

Dobbs, John, Kim, Mee-Sook, Dudley, Nicklos S, Klopfenstein, Ned B, Yeh, Aileen, Hauff, Robert D, Jones, Tyler C, Dumroese, R Kasten, Cannon, Philip G, Stewart, Jane E, (2020) Whole genome analysis of the koa wilt pathogen (Fusarium oxysporum f. sp. koae) and the development of molecular tools for early detection and monitoring BMC genomics 21 1 1--15

Warwell, Marcus V, McDonald, Geral I, Hanna, John W, Kim, Mee-Sook, Lalande, Bradley M, Stewart, Jane E, Hudak, Andrew T, Klopfenstein, Ned B, (2019) Armillaria altimontana Is Associated with Healthy Western White Pine (Pinus monticola): Potential in Situ Biological Control of the Armillaria Root Disease Pathogen, A. solidipes Forests 10 4 294

Dobbs, John, Kim, Mee-Sook, Dudley, Nicklos S, Jones, Tyler C, Dumroese, R Kasten, Cannon, Phil G, Hauff, Robert D, Klopfenstein, Ned B, Stewart, Jane E, (2019) "Development of tools for early detection, monitoring and management of the koa wilt pathogen (Fusarium oxysporum f. sp. koae) in Hawai\'\ii" 105--108

Caballero, J Ibarra, Ata, Jessa, Leddy, KA, Glenn, T, Kieran, T, Klopfenstein, NB, Kim, MS, Stewart, Jane E, (2019) "Genome and transcriptome analyses of the brown rot fungus, Pyrrhoderma noxium, reveal potential enzymes that degrade wood from diverse host trees" 109 10 183--183

Copes, Warren E, Babiker, Ebrahiem M, Arias, Renee S, Ibarra, Jorge R, Stewart, Jane E, (2019) Genome Sequence of Passalora sequoiae, Causal Agent of Needle Blight in Leyland Cypress Plant Health 2019

Dobbs, John, Kim, MS, Dudley, Natalie M, Jones, TC, Yeh, A, Dumroese, RK, Cannon, PG, Hauff, R, Klopfenstein, NB, Stewart, Jane E, (2019) "Genomic analysis of the koa wilt pathogen (Fusarium oxysporum f. sp. koae) for the development of tools for early detection and monitoring" 109 11

Ibarra Caballero, JR, , Jeon, J, Lee, YH, Fraedrich, S, Klopfenstein, NB, Kim, MS, Stewart, JE, (2019) Genomic comparisons of the laurel wilt pathogen, Raffaelea lauricola, and related tree pathogens highlight an arsenal of pathogenicity related genes. Fungal genetics and biology

Caballero, J Ibarra, Stewart, JE, (2019) "Genomic, transcriptomic and proteomic analyses of C. leucostoma isolated from peach during infection" 109 11

Harris, F, Dobbs, John, Stewart, JE, (2019) "Growing plants inoculated with nitrogen-fixing bacteria in Martian regolith as a method to increase plant biomass and accessible nitrogen" 109 11

Sitz, Rachael A, Aquino, Vince, Tisserat, Ned A, Cranshaw, Whitney S, Stewart, Jane E, (2019) Insects Visiting Drippy Blight Diseased Red Oak Trees Are Contaminated with the Pathogenic Bacterium Lonsdalea quercina Plant Disease 103 1940-1946

Jahn, CE, Stewart, JE, Essah, Samuel YC, O'Neill, Patrick Patrick Joseph, Abdo, Zaid, (2019) "Interactions between potato cropping systems, soil health, and microbial communities" 109 11

DeLong, Jeffery A, Stewart, Jane E, Valencia-Bot\'\in, Alberto, , Pedley, Kerry F, Buck, James W, Brewer, Marin T, (2019) Invasions of gladiolus rust in North America are caused by a widely-distributed clone of Uromyces transversalis PeerJ 7 e7986

Ata, Jessa, Burns, Kelly, Marchetti, S, Worrall, JJ, Stewart, JE, (2019) "New occurrence of Lophodermella sp. associated with needle cast in limber pine (Pinus flexilis) in Colorado, USA" 109 11

Miller, Stephan Tomas, Minas, Ioannis, Stewart, Jane E, (2019) Peach tree tolerance to Cytospora leucostoma infections under water deficit and increased soil pH Plant Health 2019

Gr\"unwald, NJ, , Forbes, GA, Perez-Barrera, W, Stewart, JE, Fieland, VJ, Larsen, MM, (2019) Phytophthora urerae sp. nov., a new clade 1c relative of the Irish famine pathogen Phytophthora infestans from South America Plant Pathology 68 3 557--565

Stewart, Jane E, Miller, Stephan Tomas, Minas, Ioannis, (2019) "Preventive control for Cytospora canker on peach" Fact sheet (Colorado State University. Extension). Crop series; no. 2.954

Miller, ST, Otto, KL, Sterle, David Gabriel, Minas, IS, Stewart, JE, (2019) Preventive Fungicidal Control of Cytospora leucostoma in Peach Orchards in Colorado Plant disease 103 6 1138--1147

Zeng, Yuan, Abdo, Zaid, Charkowski, Amy Olymbia, Stewart, Jane E, Frost, Kenneth, (2019) Responses of bacterial and fungal community structure to different rates of 1, 3-Dichloropropene fumigation Phytobiomes Journal 3 3 212--223

Dobbs, John, Kim, Mee-Sook, Dudley, Nicklos, Jones, Tyler C, Yeh, Aileen, Dumroese, R Kas, Cannon, Philip G, Hauff, Robert, Klopfenstein, Ned B, Stewart, Jane E, (2019) Tools for early detection and monitoring of the koa wilt pathogen (Fusarium oxysporum f. sp. koae) in Hawai’i Plant Health 2019

Fonseca, Nat\'alia R, , Ibarra Caballero, Jorge Rafael, Kim, Mee-Sook, Stewart, Jane E, Guimar\~aes, L\'ucio MS, , Alfenas, Acelino C, Klopfenstein, Ned B, (2019) Transcriptome analysis of a powdery mildew pathogen (Podosphaera pannosa) infecting Eucalyptus urophylla: De novo assembly, expression profiling and secretome prediction Forest Pathology 49 3 e12508

Zeng, Yuan, Abdo, Zaid , Charkowski, Amy Olymbia, Stewart, Jane E., Frost, Kenneth, (2019) Responses of Bacterial and Fungal Community Structure to Different Rates of 1,3-Dichloropropene Fumigation Phytobiomes Journal 3 212–223

Hanna, John W, Warwell, Marcus V, Kim, Mee-Sook, Stewart, Jane E, Klopfenstein, Ned B, (2018) "A preliminary assessment of potential distributions for Armillaria solidipes and Pseudotsuga menziesii under changing climate within the western USA"

Lalande, Bradley M, Klopfenstein, Ned B, Kim, Mee-Sook, Abdo, Zaid, Stewart, Jane E, (2018) "Changes in soil microbial communities associated with Armillaria root disease of western white pine (Pinus monticola)"

Caballero, Jorge R Ibarra, Tembrock, Luke R, Zink, Frida Anna, Gilligan, Todd Michael, Stewart, Jane E, (2018) "Development of a rapid and sensitive ddPCR method for detection of Cytospora leucostoma in peach orchards"

Davis, Seth Seth, Horne, Fiona B, Yetter, Jens C, Stewart, Jane E, (2018) Engelmann Spruce Chemotypes in Colorado and their Effects on Symbiotic Fungi Associated with the North American Spruce Beetle Journal of chemical ecology 1--10

Miller, Stephan Tomas, Sterle, David Gabriel, Minas, Ioannis, Stewart, JE, (2018) "Epidemiology of Cytospora leucostoma: A Major Limiting Factor for Colorado Peach Production" 108 10

Davis, Thomas S, Stewart, Jane E, Mann, Andrew J, Bradley, Clifford, Hofstetter, Richard W., (2018) Evidence for multiple ecological roles of Leptographium abietinum, a symbiotic fungus associated with the North American spruce beetle Fungal Ecology https://doi.org/10.1016/j.funeco.2018.04 https--doi

Davis, Seth Seth, Stewart, Jane E, Mann, Andrew J, Bradley, Clifford, Hofstetter, Richard W, (2018) Evidence for multiple ecological roles of Leptographium abietinum, a symbiotic fungus associated with the North American spruce beetle Fungal Ecology

Kim, Mee-Sook, Park, Hyo Won, Jeon, Jongbum, Lee, Yong-Hwan, Caballero, Jorge R Ibarra, Stewart, Jane E, Klopfenstein, Ned B, (2018) "Genetic and genomic studies of the Korean oak wilt fungus (Raffaelea quercus-mongolicae) provide information of its biology and ecology"

Stewart, Jane E, Ross-Davis, AL, Graҫa, RN, Alfenas, AC, Peever, TL, Hanna, JW, Uchida, JY, Hauff, RD, Kadooka, CY, Kim, M-S, others, , (2018) Genetic diversity of the myrtle rust pathogen (Austropuccinia psidii) in the Americas and Hawaii: Global implications for invasive threat assessments Forest Pathology 10.1111/efp.12378

Stewart, Jane E, Kim, Mee Sook, Klopfenstein, Ned B, (2018) Molecular Genetic Approaches Toward Understanding Forest-Associated Fungi and Their Interactive Roles Within Forest Ecosystems Current Forestry Reports 1--13

Stewart, Jane E, Miller, Stephan Tomas, Minas, Ioannis, (2018) "Preventive Control for Cytospora Canker on Peach" Colorado State University Extension Fact Sheet No. 2.954

Sitz, Rachael Altschuler, Spitzer, Dan Brien, Caballero, Jorge R Ibarra, Ocheltree, Troy W, Stewart, Jane E, (2018) "Sustained water stress increases black walnut susceptibility to the pathogen Geosmithia morbida"

Ritter, SM, Hoffman, Chad M, Stewart, Jane E, Zimmerman, T, (2018) The influence of prescribed crown fire on lodgepole pine dwarf mistletoe (Arceuthobium americanum) populations 33 years post-fire Forest Pathology e12419

Miller, Stephan Tomas, Otto, Kristen, Sterle, David Gabriel, Minas, Ioannis, Stewart, Jane E, (2018) Preventive Fungicidal Control of Cytospora leucostoma in Peach Orchards in Colorado Plant Disease

Sitz, Rachael A, Snelling, Jacob Wayne, Ibarra Caballero, Jorge Rafael, Zerillo, Marcelo M, Kathleen, Alexander, Cranshaw, Whitney S, Tisserat, Ned A, Stewart, Jane E, (2018) Drippy Blight, a Disease of Red Oaks in Colorado, U.S., Produced from the Combined Effect of the Scale Insect Allokermes galliformis and the Bacterium Lonsdalea quercina subsp. quercina Arboriculture and Urban Forestry 44(3) 146–153.

Sitz, Rachael Altschuler, Zerillo, Marcelo M, Snelling, Jacob Wayne, Caballero, Jorge Ibarra, Alexander, Kathleen, Nash, Kendra, Tisserat, Ned A, Cranshaw, Whitney S, Stewart, Jane E, (2018) Drippy Blight, a Disease of Red Oaks in Colorado, U.S., Produced from the Combined Effect of the Scale Insect Allokermes galliformis and the Bacterium Lonsdalea quercina subsp. quercina Arboriculture and Urban Forestry 44 3 146--152

Hanna, John W, Warwell, Marcus V, McDonald, Geral I, Kim, Mee-Sook, Lalande, Bradley M, Stewart, Jane E, Klopfenstein, Ned B, (2017) "Armillaria altimontana is not associated with damage to western white pine (Pinus monticola) planted in northern Idaho"

Miller, Stephan Tomas, Otto, Kristen, Sterle, David Gabriel, Minas, Ioannis, Stewart, Jane E, (2017) "Chemical options for managing Cytospora canker, a major limiting factor for colorado peach production"

Jongbum, J., K.-T. Kim., H.-J. Song, G.-W. Lee,, , K. Cheong, H. Kim, G. Choi, Y.-H. Lee,, , JE Stewart, N. B. Klopfenstein, M.-S. Kim, , (2017) Draft Genome Sequence of the Fungus Associated with Oak-Wilt Mortality in South Korea, Raffaelea quercus-mongolicae KACC44405 Genome Announcements 5 e00829

Stewart, Jane E, Ross-Davis, AL, Graҫa, RN, Alfenas, AC, Peever, TL, Hanna, JW, Uchida, JY, Hauff, RD, Kadooka, CY, Kim, M-S, others, , (2017) Genetic diversity of the myrtle rust pathogen (Austropuccinia psidii) in the Americas and Hawaii: Global implications for invasive threat assessments Forest Pathology 10.1111/efp.12378

Caballero, Jorge R Ibarra, Kim, Mee-Sook, Hanna, John Richard, Klopfenstein, Ned B, Stewart, Jane E, (2017) "Genomic comparisons of Armillaria solidipes and A. altimontana--species with different ecological behaviors"

Ritter, Scott Michael, Hoffman, Chad M, Ex, Seth, Stewart, Jane E, (2017) Impacts of lodgepole pine dwarf mistletoe (Arceuthobium americanum) infestation on stand structure and fuel load in lodgepole pine dominated forests in central Colorado BOTANY 95 3 307-321

Klopfenstein, Ned B, Stewart, Jane E, Ota, Yuko, Hanna, John W, Richardson, Bryce A, Ross-Davis, Amy L, El\'\ias-Rom\'an, Rub\'en D, , Korhonen, Kari, Ke\vca, Nenad, , Iturritxa, Eugenia, others, , (2017) Insights into the phylogeny of Northern Hemisphere Armillaria: Neighbor-net and Bayesian analyses of translation elongation factor 1-$\alpha$ gene sequences Mycologia 109 1 75--91

Stewart, Jane E, Lalande, Bradley M, Abdo, Zaid, Hanna, John Richard, Page-Dumroese, Deborah, Warwell, Marcus, Tirocke, Joanne, Kim, Mee-Sook, Klopfenstein, Ned B, (2017) "Metagenomic approaches to examine relationships of soil microbial communities with Armillaria root disease"

Albertson, Alyssa Anne, Abdo, Zaid, Schoettle, Anna W, Stewart, Jane E, Kassenbrock, Ken Kenneth, (2017) "Microbial communities of bristlecone needles and resistance in white pine blister rust"

Mohali-Castillo, Sari, Stewart, Jane E, (2017) "Microfungi associated with diseases on Theobroma cacao L. in Merida state, Venezuela"

Stewart, JE, Sahashi, N, Hattori, T, Akiba, M, Ota, Y, Shuey, L, Schlub, RL, Atibalentia, N, Brooks, F, Tang, AMC, others, , (2017) "Phylogenetic and population analyses of the invasive brown root-rot pathogen (Phellinus noxius) highlight the existence of at least two distinct populations" 143--147

Kim, Mee-Sook, Stewart, Jane E, Hanna, John W, Klopfenstein, Ned B, (2017) "Phylogeny of Northern Hemisphere Armillaria and Desarmillaria: neighbor-net and Bayesian analyses of translation elongation factor 1-$\alpha$ gene sequences"

Sitz, Rachael Altschuler, Luna, Emily Katrin, Caballero, Jorge R Ibarra, Tisserat, Ned A, Cranshaw, Whitney S, Stewart, Jane E, (2017) "Thousand cankers disease severity is not determined by Geosmithia morbida genetic grouping nor a synergistic relationship with Fusarium solani"

Sitz, Rachael , Luna, Emily, Tisserat, Ned, Caballero, Jorge, Cranshaw, Whitney, Stewart, Jane, (2017) Virulence of genetically distinct Geosmithia morbida isolates to black walnut and their response to co-inoculation with Fusarium solani. Plant Disease 101 (1) 116-120

Sitz, Rachael Altschuler, Luna, Emily Katrin, Caballero, Jorge Ibarra, Tisserat, Ned A, Cranshaw, Whitney S, Stewart, Jane E, (2017) Virulence of genetically distinct Geosmithia morbida isolates to black walnut and their response to coinoculation with Fusarium solani Plant disease 101 1 116--120

Stewart, Jane E, Otto, Kristen, Minas, Ioannis, Miller, Stephan Tomas, (2016) "Cytospora leucostoma is the most virulent and prevalent causal agent of Cytospora Canker on peaches on the Western Slope of Colorado" 106 12 122--123

Stewart, JE, Otto, Kristen, Cline, GA, Dumroese, RK, Klopfenstein, NB, Kim, M-S, (2016) First Report of Fusarium proliferatum Causing Fusarium Root Disease on Sugar Pine (Pinus lambertiana) in a Forest Container Nursery in California Plant Disease

Kolb, Thomas E, Fettig, Christopher J, Ayres, Matthew P, Bentz, Barbara J, Hicke, Jeffrey A, Mathiasen, Robert, Stewart, Jane E, Weed, Aaron S, (2016) Observed and anticipated impacts of drought on forest insects and diseases in the United States Forest Ecology and Management

Stewart, Jane E, Sahashi, N, Hattori, T, Ota, Y, Shuey, L, Schlub, R, Atibalentia, N, Brooks, F, Tang, A, Lam, R, others, , (2016) Phylogenetic and population analyses of the brown root-rot pathogen (Phellinus noxius) highlight the existence of two distinct populations Phytopathology 106 (12S): 15--16

Glenn, Anthony E, Davis, C Britton, Gao, Minglu, Gold, Scott E, Mitchell, Trevor R, Proctor, Robert H, Stewart, Jane E, Snook, Maurice E, (2016) Two Horizontally Transferred Xenobiotic Resistance Gene Clusters Associated with Detoxification of Benzoxazolinones by Fusarium Species PloS one 11 1 e0147486

Stewart, Jane E, Brooks, Kyle, Brannen, Phillip M, Cline, William O, Brewer, Marin T, (2015) Elevated Genetic Diversity in the Emerging Blueberry Pathogen Exobasidium maculosum PloS one 10 7 e0132545

Stewart, Jane E, Turner, N. Ashley, Brewer, Marin T., (2015) Evolutionary history and variation in host range of three Stagonosporopsis species causing gummy stem blight of cucurbits Fungal Biology 119 5 370-382

Stewart, Jane E, Glenn, Travis, Brewer, Marin Talbot, (2015) Extreme genetic diversity in populations of Exobasidium maculosum, an emerging blueberry pathogen Phytopathology 105 131

Huang, Feng, Fu, Yushi, Nie, Danni, Stewart, Jane E, Peever, Tobin L, Li, Hongye, (2015) Identification of a novel phylogenetic lineage of Alternaria alternata causing citrus brown spot in China Fungal Biology 119 5 320-330

Kim, Mee-Sook, Stewart, Jane E, Dudley, Nicklos, Dobbs, John, Jones, Tyler, Cannon, Phil G, James, Robert L, Dumroese, Kas, Klopfenstein, Ned B, (2015) "Molecular genetic characterization of the koa-wilt pathogen (Fusarium oxysporum): Application of molecular genetic tools toward improving koa restoration in Hawai'i" 133--135

Stewart, Jane E, Kim, M S, Shuey, L, Sahashi, N, Ota, Y, Ashiglar, S, Schlub, R L, Cannon, P G, Klopfenstein, N B, (2015) "Population genomic analyses of the brown root-rot pathogen, Phellinus noxius, examine potential introductions to the Pacific islands" Phytopathology 105 132

Stewart, Jane E, Timmer, Lavern W, Lawrence, Christopher B, Pryor, Barry M, Peever, Tobin L, (2014) Discord between morphological and phylogenetic species boundaries: incomplete lineage sorting and recombination results in fuzzy species boundaries in an asexual fungal pathogen BMC evolutionary biology 14 1 38

Ross-Davis, Amy L., Stewart, Jane E, Hanna, John W., Shaw, John D., Hudak, Andrew T., Jain, Theresa B., Denner, Robert J., Graham, Russell T., Page-Dumroese, Deborah S., Tirocke, Joanne M., others, , (2014) "Forest soil microbial communities: Using metagenomic approaches to survey permanent plots" October 6-11, 2013 139--142

Stewart, Jane E, Abdo, Zaid, Glenn, A. E., (2014) "Gene clusters FDB1 and FDB2 in Fusarium verticillioides were acquired through multiple horizontal gene transfer events" Phytopathology 104 11 114-114

Stewart, Jane E, Kroese, Duncan, Tabima, Javier F., Larsen, Meredith M., Fieland, Valerie J., Press, Caroline M., Zasada, Inga A., Gruenwald, Niklaus J., (2014) Pathogenicity, Fungicide Resistance, and Genetic Variability of Phytophthora rubi Isolates from Raspberry (Rubus idaeus) in the Western United States Plant Disease 98 12 1702-1708

Schoebel, Corine N, Stewart, Jane E, Grunwald, Niklaus J, Rigling, Daniel, Prospero, Simone, (2014) Population history and pathways of spread of the plant pathogen Phytophthora plurivora PLoSONE 9 1 e85368

Stewart, Jane E, Glenn, T., Brewer, M. T., (2014) "RADseq: A population genomics tool to study the genetic diversity of Exobasidium sp., an emerging blueberry pathogen" Phytopathology 104 11 153-153

Klopfenstein, Ned B, Hanna, John W, Ross-Davis, Amy L, Stewart, Jane E, Ota, Yuko, Medel-Ortiz, Rosario, L\'opez-Ram\'\irez, Miguel Armando, , El\'\ias-Rom\'an, Rub\'en Dami\'an, , Alvarado-Rosales, Dionicio, Kim, Mee-Sook, (2013) "Armillaria phylogeny based on tef-1$\alpha$ sequences suggests ongoing divergent speciation within the boreal floristic kingdom" 141--144

Stewart, Jane E, Andrew, Marion, Bao, Xiaodong, Chilvers, Martin I, Carris, Lori M, Peever, Tobin L, (2013) Development of sequence characterized amplified genomic regions (SCAR) for fungal systematics: proof of principle using Alternaria, Ascochyta and Tilletia Mycologia 105 4 1077-1086

Ross-Davis, Amy L, Kim, Mee-Sook, Stewart, Jane E, Hanna, John W, Shaw, John D, Klopfenstein, Ned B, (2013) "From diagnostics to metagenomics: Applications of DNA-based tools in forest pathology" 91--99

Stewart, Jane E, Kroese, D, Fieland, V, Zasada, IA, Grunwald, NJ, (2013) "Isolation and detection of Phytophthora rubi in raspberry (Rubus idaeus) production in the western United States" Phytopathology 103 139-139

Ross-Davis, AL, Stewart, Jane E, Shaw, JD, Kim, MS, Klopfenstein, NB, (2013) "Metagenomic approaches for surveying forest soil microbial communities on permanent plots" Phytopathology 103 123

Stewart, Jane E, Thomas, Kalyn A, Lawrence, Christopher B, Dang, Ha, Pryor, Barry M, Timmer, LM, Peever, Tobin L, (2013) Signatures of recombination in clonal lineages of the citrus brown spot pathogen, Alternaria alternata sensu lato Phytopathology 103 7 741-749

Ross-Davis, AL, Stewart, JE, Hanna, JW, Kim, M-S, Knaus, BJ, Cronn, R, Rai, H, Richardson, BA, McDonald, GI, Klopfenstein, NB, (2013) Transcriptome of an A rmillaria root disease pathogen reveals candidate genes involved in host substrate utilization at the host--pathogen interface Forest Pathology 43 6 468--477

Ross‐Davis, AL, Stewart, Jane E, Hanna, JW, Kim, M‐S, Knaus, BJ, Cronn, R, Rai, H, Richardson, BA, McDonald, GI, Klopfenstein, NB, (2013) Transcriptome of an Armillaria root disease pathogen reveals candidate genes involved in host substrate utilization at the host–pathogen interface Forest Pathology 43 6 468-477

Ross-Davis, Amy L, Stewart, Jane E, Hanna, John W, Kim, Mee-Sook, Cronn, Rich C, Rai, Hardeep S, Richardson, Bryce A, McDonald, Geral I, Klopfenstein, Ned B, (2012) "De novo assembly and transcriptome characterization of an Armillaria solidipes mycelial fan" 165--168

Kim, Mee‐Sook, Stewart, Jane E, Dumroese, R Kasten, Klopfenstein, Ned B, (2012) Occurrence of the Root Rot Pathogen, Fusarium commune, in Forest Nurseries of? the Midwestern and Western United States Phytopathology 160 2 112-114

Stewart, JE, Dumroese, RK, Klopfenstein, NB, Kim, M-S, (2012) "Occurrence of the root-rot pathogen, Fusarium commune, in midwestern and western United States" 161--163

Kim, Min Kyung, Stewart, Jane E, Ota, Y, Hanna, JW, Ross-Davis, AL, Klopfenstein, NB, (2012) "Phylogenetic relationships among northern hemisphere Armillaria species based on the tef-1 alpha locus" Phytopathology 102 63-64

Ross-Davis, A, Stewart, Jane E, Hanna, John Richard, Kim, Min Kyung, Cronn, R, Rai, H, Richardson, B, McDonald, G, Klopfenstein, N, (2012) "Transcriptome characterization of an Armillaria root disease pathogen reveals candidate pathogenicity-related genes" Phytopathology 102 102-103

Stewart, JE, Abdo, Zaid, Dumroese, RK, Klopfenstein, NB, Kim, M-S, (2012) Virulence of Fusarium oxysporum and F. commune to Douglas-fir (Pseudotsuga menziesii) seedlings Forest Pathology 42 3 220--228

Stewart, Jane E, Abdo, Zaid, Dumroese, RK, Klopfenstein, NB, Kim, M‐S, (2012) Virulence of Fusarium oxysporum and F. commune to Douglas‐fir (Pseudotsuga menziesii) seedlings Forest Pathology 42 3 220-228

Humann, Jodi L, Wildung, Mark, Cheng, Chun-Huai, Lee, Taein, Stewart, Jane E, Drew, Jennifer C, Triplett, Eric W, Main, Doreen, Schroeder, Brenda K, (2011) Complete genome of the onion pathogen Enterobacter cloacae EcWSU1 Standards in genomic sciences 5 3 279

Stewart, Jane E, Kawabe, Masato, Abdo, Zaid, Arie, Tsutomu, Peever, Tobin L., (2011) Contrasting Codon Usage Patterns and Purifying Selection at the Mating Locus in Putatively Asexual Alternaria Fungal Species Plos One 6 5

Ross-Davis, A L, Stewart, Jane E, Hanna, J W, Kim, M S, Cronn, R, Rai, H, Richardson, B R, McDonald, G I, Klopfenstein, N B, (2011) "De novo sequence assembly and transcriptome characterization of an Armillaria solidipes mycelial fan" 59th Western International Forest Disease Work Conference

Stewart, Jane E, Ozkilinc, H, Timmer, L, Pryor, B, Peever, T, (2011) "Evolutionary history and species boundaries of the citrus brown spot fungus" Phytopathology 101 S171-S171

Bao, X, Stewart, Jane E, Carris, L, (2011) "How many species cause common and dwarf bunt of wheat" Phytopathology 101 S13

Stewart, Jane E, (2011) Mating system and speciation of the citrus brown spot pathogen, Alternaria alternata

Negi, Vishal Singh, Pal, Archana, Singh, Ratnesh, Borthakur, Dulal, Pala, Archana, Negi, Vishal Singh, Borthakur, Dulal, Rushanaedy, Isabel, Jones, Tyler, Dudley, Nicklos, others, , (2011) Pacific Rim Forestry/Silviculture and Forest Ecology Journal of Forestry 109 8 557--570

Stewart, Jane E, Abdo, Zaid, Dumroese, R., Klopfenstein, N. B., Kim, Min Kyung, (2011) "Virulence of Fusarium root-disease pathogens (Fusarium oxysporum and F. commune) to Douglas-fir (Pseudotsuga menziesii)" Phytopathology 101 6 S171-S171

Akamatsu, Hajime O, Chilvers, Martin I, Stewart, Jane E, Peever, Tobin L, (2010) Identification and function of a polyketide synthase gene responsible for 1, 8-dihydroxynaphthalene-melanin pigment biosynthesis in Ascochyta rabiei Current genetics 56 4 349-360

Peever, TL, Drader, T, Njambere, EN, Attanayake, RN, Stewart, Jane E, (2009) "Cloning and characterization of anonymous regions of Ascochyta lentis and a. Fabae genomes and suitability of these regions for phylogenetic analysis of Ascochyta species" Second International Ascochyta Workshop

Chilvers, Martin I, Rogers, Jack D, Dugan, Frank M, Stewart, Jane E, Chen, Weidong, Peever, Tobin L, (2009) Didymella pisi sp. nov., the teleomorph of Ascochyta pisi Mycological research 113 3 391-400

Stewart, Jane E, Kawabe, M, Arie, T, Peever, TL, (2009) "Purifying selection and biased codon usage at the mating locus in Alternaria" Phytopathology 99 S124-S125

Mondal, SN, Stewart, Jane E, Peever, TL, Timmer, LW, (2007) "Isolates of Alternaria alternata doubly pathogenic to rough lemon and tangerines" Phytopathology 97 S79-S79

Stewart, Jane E, Kim, Min Kyung, James, RL, Dumroese, R, Klopfenstein, NB, (2006) "Molecular characterization of Fusarium oxysporum and F-commune isolates collected from a conifer nursery" Phytopathology 96 S111-S111

Stewart, Jane E, Kim, Mee-Sook, James, Robert L, Dumroese, R Kasten, Klopfenstein, Ned B, (2006) Molecular characterization of Fusarium oxysporum and Fusarium commune isolates from a conifer nursery Phytopathology 96 10 1124-1133

Halik, S, Stewart, Jane E, Bergdahl, DR, (2006) "Viability of Sirococcus clavigignenti-juglandacearum conidia in beetle fecal pellets" Phytopathology 96 6

McDonald, Geral I, Tanimoto, Philip D, Rice, Thomas M, Hall, David E, Stewart, Jane E, Zambino, Paul J, Tonn, Jonalea R, Klopfenstein, Ned B, Kim, Mee-Sook, (2005) Fuels planning: Science synthesis and integration; environmental consequences fact sheet 13: Root Disease Analyzer-Armillaria Response Tool (ART) RMRS-RN-23-13. Fort Collins, CO: US Department of Agriculture, Rocky Mountain Research Station. 2 p. 23

McDonald, Geral I, Tanimoto, Philip D, Rice, Thomas M, Hall, David E, Stewart, Jane E, Zambino, Paul J, Tonn, Jonalea R, Klopfenstein, Ned B, Kim, Mee-Sook, (2005) "Root Disease Analyzer—Armillaria Response Tool (ART)" Environmental Consequences Fact Sheet: 13 Research Note RMRSRN-23-13-WWW.

Rippy, Raini C, Stewart, Jane E, Zambino, Paul J, Klopfenstein, Ned B, Tirocke, Joanne M, Kim, Mee-Sook, Thies, Walter G, (2005) Root diseases in coniferous forests of the Inland West: potential implications of fuels treatments The Bark Beetles, Fuels, and Fire Bibliography Gen. Tech. Rep. RMRS-GTR-141 32

Stewart, Jane E, Kim, M-S, James, RL, Dumroese, RK, Klopfenstein, NB, (2004) "Molecular characterization of Fusarium oxysporum from tree nurseries: tools for early detection of pathogens" Phytopathology 94 S99-S99

Stewart, Jane E, Halik, S, Bergdahl, D R, (2004) "Viability of Sirococcus clavigignenti juglandacearum conidia on exoskeletons of three coleopteran species" the IUFRO Working Party 7.02.02 Shoot and Foliage diseases

Stewart, Jane E, Halik, S, Bergdahl, DR, (2004) Viability of Sirococcus clavigignenti-juglandacearum conidia on exoskeletons of three coleopteran species Plant disease 88 10 1085-1091

Halik, S, Stewart, Jane E, Bergdahl, D R, (2002) "Comparison of butternut curculio wounds and artificial wounds as infection courts for Sirococcus clavigignenti-juglandacearum on butternut seedlings" Phytopathology 93 6 135

Stewart, Jane E, Halik, S, Bergdahl, D R, (2002) "Conidiospores of the butternut canker fungus carried on the exoskeletons of three different potential beetle vectors" Phytopathology 93 6 133

Click here for C.V.