Al-Shayeb, Basem, Schoelmerich, Marie C, West-Roberts, Jacob, Valentin-Alvarado, Luis E, Sachdeva, Rohan, Mullen, Susan, Crits-Christoph, Alexander, Wilkins, Michael J, Williams, Kenneth H, Doudna, Jennifer A, others, , (2022) Borgs are giant genetic elements with potential to expand metabolic capacity Nature 1--6

Roth, Holly, Borch, Thomas, Young, Robert Bruce, Bahureksa, William, Blakney, Greg T, Nelson, Amelia, Wilkins, Michael J, McKenna, Amy, (2022) Enhanced speciation of pyrogenic organic matter from wildfires enabled by 21 T FT-ICR mass spectrometry Analytical Chemistry 94 6 2973--2980

Nelson, Amelia, Wilkins, Michael J, (2022) "How micro-organisms in the soil respond to and are altered by forest wildfire" NATURE MICROBIOLOGY 7 9 1329--1330

Roth, Holly, Nelson, Amelia, McKenna, Amy, Fegel, Timothy S, Young, Robert Bruce, Rhoades, Charles C, Wilkins, Michael J, Borch, Thomas, (2022) Impact of beaver ponds on biogeochemistry of organic carbon and nitrogen along a fire-impacted stream Environmental Science: Processes \& Impacts 24 10 1661--1677

Nelson, Amelia, Toyoda, Jason, Chu, Rosalie K, Toli\'c, Nikola, , Garayburu-Caruso, Vanessa A, Saup, Casey M, Renteria, Lupita, Wells, Jacqueline R, Stegen, James C, Wilkins, Michael J, others, , (2022) Implications of sample treatment on characterization of riverine dissolved organic matter Environmental Science: Processes \& Impacts 24 5 773--782

Amundson, Kaela Kay, Borton, Mikayla A, Daly, Rebecca A, Hoyt, David W, Wong, Allison, Eder, Elizabeth, Moore, Joseph, Wunch, Kenneth, Wrighton, Kelly Catherine, Wilkins, Michael J, (2022) Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation Microbiome 10 1 1--15

Nelson, Amelia, Narrowe, Adrienne B, Rhoades, Charles C, Fegel, Timothy S, Daly, Rebecca A, Roth, Holly, Chu, Rosalie K, Amundson, Kaela Kay, Young, Robert Bruce, Steindorff, Andrei S, others, , (2022) Wildfire-dependent changes in soil microbiome diversity and function Nature microbiology 7 9 1419--1430

Al-Shayeb, Basem, Schoelmerich, Marie C, West-Roberts, Jacob, Valentin-Alvarado, Luis E, Sachdeva, Rohan, Mullen, Susan, Crits-Christoph, Alexander, Wilkins, Michael J, Williams, Kenneth H, Doudna, Jennifer A, others, , (2021) Borgs are giant extrachromosomal elements with the potential to augment methane oxidation bioRxiv

Welch, Susan A, Sheets, Julia M, Daly, Rebecca A, Hanson, Andrea, Sharma, Shikha, Darrah, Thomas, Olesik, John, Lutton, Anthony, Mouser, Paula J, Wrighton, Kelly Catherine, others, , (2021) Comparative geochemistry of flowback chemistry from the Utica/Point Pleasant and Marcellus formations Chemical Geology 564 120041

Mclaughlin, Molly Cook, McDevitt, Bonnie, Miller, Hannah, Amundson, Kaela Kay, Wilkins, Michael J, Warner, Nathaniel R, Blotevogel, Jens, Borch, Thomas, (2021) Constructed wetlands for polishing oil and gas produced water releases Environmental Science: Processes & Impacts 23 12 1961-1976

Nelson, Amelia, Toyoda, Jason, Chu, Rosalie, Tolic, Nikola, Garayburu-Caruso, Vanessa, Saup, Casey, Renteria, Lupita, Wells, Jacqueline, Stegen, James, Wilkins, Michael, others, , (2021) "East River Surface and Pore Water FTICR-MS Data Associated with “Implications of sample treatment on characterization of the riverine environmental metabolome”" Environmental System Science Data Infrastructure for a Virtual Ecosystem~…

Price, James T, McLachlan, Rowan H, Jury, Christopher P, Toonen, Robert J, Wilkins, Michael J, Grottoli, Andr\'ea G, , (2021) Effect of species, provenance, and coral physiology on the composition of Hawaiian coral-associated microbial communities Coral Reefs 40 5 1537--1548

McAdams, BC, Arnold, WA, Wilkins, MJ, Chin, YP, (2021) Ice Cover Influences Redox Dynamics in Prairie Pothole Wetland Sediments Journal of Geophysical Research: Biogeosciences 126 10 e2021JG006318

Nelson, Amelia, Toyoda, Jason, Chu, Rosalie K, Tolic, Nikola, Garayburu-Caruso, Vanessa, Saup, Casey M, Renteria, Lupita, Wells, Jacqueline R, Stegen, James, Wilkins, Michael J, others, , (2021) Implications of sample treatment on characterization of the riverine environmental metabolome bioRxiv

Nelson, Amelia, Narrowe, Adrienne B, Rhoades, Charles C, Fegel, Timothy S, Daly, Rebecca A, Roth, Holly, Chu, Rosalie K, Amundson, Kaela Kay, Geonczy, Sara E, Emerson, Joanne B, others, , (2021) Playing with FiRE: A genome resolved view of the soil microbiome responses to high severity forest wildfire bioRxiv

Wallace, Corey D, Sawyer, Audrey H, Barnes, Rebecca T, Soltanian, Mohamad Reza, Gabor, Rachel S, Wilkins, Michael J, Moore, Myles T, (2020) A model analysis of the tidal engine that drives nitrogen cycling in coastal riparian aquifers Water Resources Research 56 4 e2019WR025662

Ahmed, Musfique, Saup, Casey M, Wilkins, Michael J, Lin, Lian-Shin, (2020) Continuous ferric iron-dosed anaerobic wastewater treatment: Treatment performance, sludge characteristics, and microbial composition Journal of Environmental Chemical Engineering 8 2 103537

Danczak, Robert E, Daly, RA, Borton, MA, Stegen, James C, Roux, Simon, Wrighton, Kelly Catherine, Wilkins, MJ, (2020) Ecological assembly processes are coordinated between bacterial and viral communities in fractured shale ecosystems Msystems 5 2

Cliffe, Lisa, Nixon, Sophie, Taylor, Kevin G, Boothman, Chris, Wilkins, Michael J, Wrighton, Kelly Catherine, Lloyd, Jonathan Richard, Eden, Bob, Daly, Rebecca A, (2020) Identification of persistent sulfidogenic bacteria in shale gas produced waters Frontiers in microbiology 11 286

Bryant, Savannah R, Sawyer, Audrey H, Briggs, Martin A, Saup, Casey M, Nelson, Amelia, Wilkins, Michael J, Christensen, John N, Williams, Kenneth H, (2020) Seasonal manganese transport in the hyporheic zone of a snowmelt-dominated river (East River, Colorado, USA) Hydrogeology Journal 28 4 1323--1341

Nixon, Sophie L., Daly, Rebecca A., Borton, Mikayla A., Solden, Lindsey M., Welch, Susan A., Cole, David R., Mouser, Paula J., Wilkins, Michael J., Wrighton, Kelly Catherine, (2019) Genome-Resolved Metagenomics Extends the Environmental Distribution of the Verrucomicrobia Phylum to the Deep Terrestrial Subsurface mSphere 4 6

Danczak, Robert E, Johnston, Michael D, Kenah, Chris, Slattery, Michael, Wilkins, Michael J, (2019) Capability for arsenic mobilization in groundwater is distributed across broad phylogenetic lineages PloS one 14 9

Ahmed, Musfique, Saup, Casey M, Wilkins, Michael J, Lin, Lian-Shin, (2019) Continuous Ferric Iron-dosed Anaerobic Wastewater Treatment: Treatment Performance, Sludge Characteristics, and Microbial Composition Journal of Environmental Chemical Engineering 103537

Booker, Anne E, Hoyt, David W, Meulia, Tea, Eder, Elizabeth, Nicora, Carrie D, Purvine, Samuel O, Daly, Rebecca A, Moore, Joseph Daniel, Wunch, Kenneth, Pfiffner, Susan M, others, , (2019) Deep-Subsurface Pressure Stimulates Metabolic Plasticity in Shale-Colonizing Halanaerobium spp. Applied and environmental microbiology 85 12 e00018--19

Heavner, Gretchen LW, Mansfeldt, Cresten Brant, Wilkins, Michael J, Nicora, Carrie D, Debs, Garrett E, Edwards, Elizabeth Anne, Richardson, Ruth E, (2019) Detection of Organohalide-Respiring Enzyme Biomarkers at a Bioaugmented TCE-Contaminated Field Site Frontiers in Microbiology 10 1433

Ahmed, Musfique, Lin, Oliver, Saup, Casey M, Wilkins, Michael J, Lin, Lian-Shin, (2019) Effects of Fe/S ratio on the kinetics and microbial ecology of an Fe (III)-dosed anaerobic wastewater treatment system Journal of hazardous materials 369 593--600

Wunch, Kenneth, Moore, Joseph Daniel, Massie-Schuh, Ella, Wrighton, Kelly Catherine, Wilkins, Michael, Daly, Rebecca, (2019) Field audits optimize Anadarko basin operator’s microbial control program OIL \& GAS JOURNAL 117 9 51--58

Nelson, Amelia, Sawyer, Audrey H, Gabor, Rachel S, Saup, Casey M, Bryant, Savannah R, Harris, Kira D, Briggs, Martin A, Williams, Kenneth H, Wilkins, Michael J, (2019) Heterogeneity in hyporheic flow, pore water chemistry, and microbial community composition in an alpine streambed Journal of Geophysical Research: Biogeosciences

Saup, CM, Bryant, SR, , Nelson, AR, Harris, KD, Sawyer, AH, Christensen, JN, Tfaily, MM, Williams, KH, Wilkins, MJ, (2019) Hyporheic zone microbiome assembly is linked to dynamic water mixing patterns in snowmelt-dominated headwater catchments. Journal of Geophysical Research: Biogeosciences

Evans, Morgan V, Getzinger, Gordon, Luek, Jenna L, Hanson, Andrea, Mclaughlin, Molly Cook, Blotevogel, Jens, Welch, Susan A, Nicora, Carrie D, Purvine, Samuel O, Xu, Chengdong, others, , (2019) In situ transformation of ethoxylate and glycol surfactants by shale-colonizing microorganisms during hydraulic fracturing The ISME Journal 1

Manna, Kathleen, Moore, Joseph Daniel, Wunch, Kenneth, Massie-Schuh, Ella, Daly, Rebecca A, Wrighton, Kelly Catherine, Wilkins, Michael, others, , (2019) "Relative Performance of Various 16S iTag Amplicon Sequencing Primer Pairs in Profiling Microbial Communities Relevant to Oil \& Gas Operations"

Martins, Paula Dalcin, Frank, Jeroen, Mitchell, Hugh, Markillie, Lye Meng, Wilkins, Michael J, (2019) Wetland sediments host diverse microbial taxa capable of cycling alcohols Applied and environmental microbiology 85 12 e00189--19

Daly, Reb Anne, Roux, S., Borton, Kayla Ann, Morgan, D. M., Johnston, M. D., Booker, A. E., Hoyt, D. W., Meulia, T., Wolfe, R. A., Hanson, Andrea, Mouser, P. J., Sullivan, M. B., Wrighton, Kelly Catherine, Wilkins, Mike James, (2019) Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing Nature Microbiology 4 352–361

Daly, Reb Anne, Wrighton, Kelly Catherine, Wilkins, Mike James, (2018) "Characterizing the Deep Terrestrial Subsurface Microbiome" Humana Press, New York, NY 1--15

Borton, Kayla Ann, Daly, Reb Anne, O'Banion, Bridget, Hoyt, David W, Marcus, Daniel N, Welch, Susan, Hastings, Sybille S, Meulia, Tea, Wolfe, Richard Alan, Booker, Anne E, others, , (2018) Comparative genomics and physiology of the genus Methanohalophilus, a prevalent methanogen in hydraulically fractured shale Environmental microbiology

Grottoli, Andr\'ea G, , Martins, Paula Dalcin, Wilkins, Mike James, Johnston, Michael D, Warner, Mark E, Cai, Wei-Jun, Melman, Todd F, Hoadley, Kenneth D, Pettay, D Tye, Levas, Stephen, others, , (2018) Coral physiology and microbiome dynamics under combined warming and ocean acidification PloS one 13 1 e0191156

Borton, Kayla Ann, Hoyt, David W, Roux, Simon, Daly, Reb Anne, Welch, Susan A, Nicora, Carrie D, Purvine, Samuel, Eder, Elizabeth K, Hanson, Andrea, Sheets, Julie M, others, , (2018) Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales Proceedings of the National Academy of Sciences 115 28 E6585--E6594

Freire, Lucia Rodriguez, Overbey, Andrew, Saup, Casey, Ali, Abdulmehdi, Wilkins, Mike James, Cerrato, Jose, (2018) "Effect of reducing and re-oxidizing conditions on metal mobility in sediments from the Animas River" 255

Stegen, James C, Johnson, Tim, Fredrickson, James K, Wilkins, Mike James, Konopka, Allan E, Nelson, William C, Arntzen, Evan V, Chrisler, William B, Chu, Rosalie K, Fansler, Sarah J, others, , (2018) Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology Nature communications 9 1 585

Evans, Morgan Volker, Panescu, Jenny, Hanson, Andrea, Welch, Susan A, Sheets, Julia M, Nastasi, Nicholas, Daly, Reb Anne, Cole, David Robert, Darrah, Thomas H, Wilkins, Mike James, others, , (2018) Members of Marinobacter and Arcobacter influence biogeochemistry during early production of hydraulically fractured shale gas wells in the Appalachian Basin Frontiers in Microbiology 9 2646

Danczak, Robert E, Johnston, Michael D, Kenah, Chris, Slattery, Michael, Wilkins, Mike James, (2018) Microbial Community Cohesion Mediates Community Turnover in Unperturbed Aquifers mSystems 3 4 e00066--18

Stegen, James C, Johnson, Tim, Fredrickson, James K, Wilkins, Mike James, Konopka, Allan E, Nelson, William C, Arntzen, Evan V, Chrisler, William B, Chu, Rosalie K, Fansler, Sarah J, others, , (2018) Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology Nature communications 9 1 1034

Martins, Paula Dalcin, Danczak, Robert E, Roux, Simon, Frank, Jeroen, Borton, Kayla Ann, Wolfe, Richard Alan, Burris, Marie N, Wilkins, Mike James, (2018) Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems Microbiome 6 1 138

Dalcin Martins, Paula, Hoyt, David W, Bansal, Sheel, Mills, Christopher T, Tfaily, Malak, Tangen, Brian A, Finocchiaro, Raymond G, Johnston, Michael D, McAdams, Brandon C, Solensky, Matthew J, others, , (2017) Abundant carbon substrates drive extremely high sulfate reduction rates and methane fluxes in prairie pothole wetlands Global change biology 23 8 3107--3120

Saup, Casey M, Williams, Kenneth H, Rodr\'\iguez-Freire, Luc\'\ia, , Cerrato, Jos\'e M, , Johnston, Michael D, Wilkins, Mike James, (2017) Anoxia stimulates microbially catalyzed metal release from Animas River sediments Environmental Science: Processes \& Impacts 19 4 578--585

Sharma, Shikha, Carr, Timothy R, Mouser, Paula J, Wrighton, Kelly Catherine, Cole, David, Wilkins, Mike James, Darrah, Thomas, Hakala, Alexandra, (2017) "Biogeochemical Characterization of Core, Fluids, and Gas at MSEEL Site" 847--854

Booker, Anne E, Johnston, Michael D, Daly, Reb Anne, Wrighton, Kelly Catherine, Wilkins, Mike James, (2017) Draft Genome Sequences of Multiple Frackibacter Strains Isolated from Hydraulically Fractured Shale Environments Genome announcements 5 32 e00608--17

Saup, Casey Morrisroe, Sawyer, Audrey H, Williams, Kenneth Hurst, Wilkins, Mike James, (2017) "Just Around the Riverbend: Seasonal hydrologic controls on dynamic hyporheic zone redox biogeochemistry"

Danczak, RE, Johnston, MD, Kenah, Christopher, Slattery, Michael, Wrighton, Kelly Catherine, Wilkins, MJ, (2017) Members of the Candidate Phyla Radiation are functionally differentiated by carbon-and nitrogen-cycling capabilities Microbiome 5 1 112

Booker, Anne Elizabeth, Borton, Kayla Ann, Daly, Reb Anne, Nicora, Carrie, Welch, Sue, Dusane, Devendra, Johnston, Michael, Sharma, Shikha, Mouser, Paula J, Cole, David R, others, , (2017) "Potential Repercussions Associated with Halanaerobium Colonization of Hydraulically Fractured Shales (226730)"

Booker, Anne E, Borton, Kayla Ann, Daly, Reb Anne, Welch, Susan A, Nicora, Carrie D, Hoyt, David W, Wilson, Travis, Purvine, Samuel O, Wolfe, Richard Alan, Sharma, Shikha, others, , (2017) Sulfide generation by dominant Halanaerobium microorganisms in hydraulically fractured shales mSphere 2 4 e00257--17

Yabusaki, Steven B, Wilkins, Mike James, Fang, Yilin, Williams, Kenneth H, Arora, Bhavna, Bargar, John, Beller, Harry R, Bouskill, Nicholas J, Brodie, Eoin L, Christensen, John N, others, , (2017) Water table dynamics and biogeochemical cycling in a shallow, variably-saturated floodplain Environmental science \& technology 51 6 3307--3317

Hug, Laura A, Thomas, Brian C, Sharon, Itai, Brown, Christopher T, Sharma, Ritin, Hettich, Robert L, Wilkins, Mike James, Williams, Kenneth H, Singh, Andrea, Banfield, Jillian F, (2016) Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages Environmental microbiology 18 1 159--173

Stegen, James C, Fredrickson, James K, Wilkins, Mike James, Konopka, Allan E, Nelson, William C, Arntzen, Evan V, Chrisler, William B, Chu, Rosalie K, Danczak, Robert E, Fansler, Sarah J, others, , (2016) Groundwater--surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover Nature communications 7 11237

Harvey, Omar R, Qafoku, Nikolla P, Cantrell, Kirk J, Wilkins, Mike James, Brown, Christopher F, (2016) Methanogenesis-induced pH--Eh shifts drives aqueous metal (loid) mobility in sulfide mineral systems under CO 2 enriched conditions Geochimica et Cosmochimica Acta 173 232--245

Borton, Kayla Ann, Daly, Reb Anne, Morgan, David M, Booker, Anne E, Hoyt, David W, Mouser, Paula J, Sharma, Shikha, Wilkins, Mike James, Wrighton, Kelly Catherine, (2016) "Methanohalophilus is the Dominant Source of Biogenic Methane in Hydraulically Fractured Shales"

Daly, Reb Anne, Borton, Kayla Ann, Wilkins, Mike James, Hoyt, David W, Kountz, Duncan J, Wolfe, Richard Alan, Welch, Susan A, Marcus, Daniel N, Trexler, Ryan V, MacRae, Jean D, others, , (2016) Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales Nature microbiology 1 10 16146

Daly, Reb Anne, Borton, Kayla Ann, Wilkins, Mike James, Hoyt, David W, Kountz, Duncan J, Wolfe, Richard Alan, Welch, Susan A, Marcus, Daniel N, Trexler, Ryan V, MacRae, Jean D, others, , (2016) Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales Nature microbiology 1 10 16146

Wrighton, Kelly Catherine, Castelle, Cindy J, Varaljay, Vanessa A, Satagopan, Sriram, Brown, Christopher T, Wilkins, Mike James, Thomas, Brian C, Sharon, Itai, Williams, Kenneth H, Tabita, F Robert, others, , (2016) RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria The ISME journal 10 11 2702

Danczak, Robert E, Sawyer, Audrey H, Williams, Kenneth H, Stegen, James C, Hobson, Chad, Wilkins, Mike James, (2016) Seasonal hyporheic dynamics control coupled microbiology and geochemistry in Colorado River sediments Journal of Geophysical Research: Biogeosciences 121 12 2976--2987

Danczak, Robert E, Yabusaki, Steven B, Williams, Kenneth H, Fang, Yilin, Hobson, Chad, Wilkins, Mike James, (2016) Snowmelt induced hydrologic perturbations drive dynamic microbiological and geochemical behaviors across a shallow riparian aquifer Frontiers in Earth Science 4 57

Evert, Mary, Panescu, Jenny, Daly, Reb Anne, Welch, Susan A, Hespen, Jessica, Sharma, Shikha, Cole, David R, Darrah, Thomas H, Wilkins, Mike James, Wrighton, Kelly Catherine, others, , (2016) "Temporal Changes in Fluid Biogeochemistry and Microbial Cell Abundance after Hydraulic Fracturing in Marcellus Shale"

Anantharaman, Karthik, Brown, Christopher T, Hug, Laura A, Sharon, Itai, Castelle, Cindy J, Probst, Alexander J, Thomas, Brian C, Singh, Andrea, Wilkins, Mike James, Karaoz, Ulas, others, , (2016) Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system Nature communications 7 13219

Grate, Jay W, Mo, Kai-For, Shin, Yongsoon, Vasdekis, Andreas, Warner, Marvin G, Kelly, Ryan T, Orr, Galya, Hu, Dehong, Dehoff, Karl J, Brockman, Fred J, others, , (2015) Alexa fluor-labeled fluorescent cellulose nanocrystals for bioimaging solid cellulose in spatially structured microenvironments Bioconjugate chemistry 26 3 593--601

Long, Philip E, Williams, Kenneth H, Davis, James A, Fox, Patricia M, Wilkins, Mike James, Yabusaki, Steven B, Fang, Yilin, Waichler, Scott R, Berman, Elena SF, Gupta, Manish, others, , (2015) Bicarbonate impact on U (VI) bioreduction in a shallow alluvial aquifer Geochimica et Cosmochimica Acta 150 106--124

Merkley, Eric D, Wrighton, Kelly Catherine, Castelle, Cindy J, Anderson, Brian J, Wilkins, Mike James, Shah, Vega, Arbour, Tyler, Brown, Joseph N, Singer, Steven W, Smith, Richard D, others, , (2015) Changes in protein expression across laboratory and field experiments in Geobacter bemidjiensis Journal of proteome research 14 3 1361--1375

Handley, Kim M, Wrighton, Kelly Catherine, Miller, Christopher S, Wilkins, Mike James, Kantor, Rose S, Thomas, Brian C, Williams, Kenneth H, Gilbert, Jack A, Long, Philip E, Banfield, Jillian F, (2015) Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points Environmental microbiology 17 3 622--636

Holmes, Dawn E, Giloteaux, Ludovic, Chaurasia, Akhilesh K, Williams, Kenneth H, Luef, Birgit, Wilkins, Mike James, Wrighton, Kelly Catherine, Thompson, Courtney A, Comolli, Luis R, Lovley, Derek R, (2015) Evidence of Geobacter-associated phage in a uranium-contaminated aquifer The ISME journal 9 2 333

Castelle, Cindy J, Wrighton, Kelly Catherine, Thomas, Brian C, Hug, Laura A, Brown, Christopher T, Wilkins, Mike James, Frischkorn, Kyle R, Tringe, Susannah G, Singh, Andrea, Markillie, Lye Meng, others, , (2015) Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling Current biology 25 6 690--701

McGuinness, Lora R, Wilkins, Mike James, Williams, Kenneth H, Long, Philip E, Kerkhof, Lee J, (2015) Identification of bacteria synthesizing ribosomal RNA in response to uranium addition during biostimulation at the Rifle, CO Integrated Field Research site PloS one 10 9 e0137270

Wilkins, Mike James, Fredrickson, Jim K, (2015) "Terrestrial subsurface ecosystem" Pacific Northwest National Laboratory (PNNL), Richland, WA (US)

Brown, Christopher T, Hug, Laura A, Thomas, Brian C, Sharon, Itai, Castelle, Cindy J, Singh, Andrea, Wilkins, Mike James, Wrighton, Kelly Catherine, Williams, Kenneth H, Banfield, Jillian F, (2015) Unusual biology across a group comprising more than 15\% of domain Bacteria Nature 523 7559 208

Kieft, TL, Onstott, TC, Ahonen, L, Aloisi, V, Colwell, FS, Engelen, B, Fendrihan, S, Gaidos, E, Harms, U, Head, I, others, , (2015) Workshop to develop deep-life continental scientific drilling projects Scientific Drilling 19 43--53

Wilkins, Mike James, Hoyt, David W, Marshall, Matthew J, Alderson, Paul A, Plymale, Andrew E, Markillie, L Meng, Tucker, Abby E, Walter, Eric D, Linggi, Bryan E, Dohnalkova, Alice C, others, , (2014) CO2 exposure at pressure impacts metabolism and stress responses in the model sulfate-reducing bacterium Desulfovibrio vulgaris strain Hildenborough Frontiers in microbiology 5 507

Wrighton, Kelly Catherine, Castelle, Cindy J, Wilkins, Mike James, Hug, Laura A, Sharon, Itai, Thomas, Brian C, Handley, Kim M, Mullin, Sean W, Nicora, Carrie D, Singh, Andrea, others, , (2014) Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer The ISME journal 8 7 1452

Wilkins, Mike James, Kennedy, David W, Castelle, Cindy J, Field, Erin K, Stepanauskas, Ramunas, Fredrickson, James K, Konopka, Allan E, (2014) Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer Microbiology 160 2 362--372

Vasdekis, Andreas E, Wilkins, Mike James, Grate, Jay W, Kelly, Ryan T, Konopka, AE, Xantheas, Sotiris S, Chang, T-M, (2014) Solvent immersion imprint lithography Lab on a Chip 14 12 2072--2080

Wilkins, Mike James, Daly, Reb Anne, Mouser, Paula J, Trexler, Ryan, Wrighton, Kelly Catherine, Sharma, Shikha, Cole, David R, Biddle, Jennifer F, Denis, Elizabeth, Fredrickson, Jim K, others, , (2014) Trends and future challenges in sampling the deep terrestrial biosphere Frontiers in microbiology 5 481

Jin, Hongjun, Lin, Chiann-Tso, Shang, Jianying, Wilkins, Mike James, Liu, Yingbin, Gong, Wei, Xu, Weiping, Squier, Thomas C, Long, Philip E, (2013) A$\beta$-Like Peptide Displayed on Bacteriophage T7 Catalyzes Chromate and Uranyl Reduction Journal of Environmental Protection 4 08 857

Giloteaux, Ludovic, Holmes, Dawn E, Williams, Kenneth H, Wrighton, Kelly Catherine, Wilkins, Mike James, Montgomery, Alison P, Smith, Jessica A, Orellana, Roberto, Thompson, Courtney A, Roper, Thomas J, others, , (2013) Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation The ISME journal 7 2 370

Holmes, Dawn E, Giloteaux, Ludovic, Williams, Kenneth H, Wrighton, Kelly Catherine, Wilkins, Mike James, Thompson, Courtney A, Roper, Thomas J, Long, Philip E, Lovley, Derek R, (2013) Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater The ISME journal 7 7 1286

Williams, Kenneth H, Wilkins, Mike James, N'Guessan, A Lucie, , Arey, Bruce, Dodova, Elena, Dohnalkova, Alice, Holmes, Dawn, Lovley, Derek R, Long, Philip E, (2013) Field evidence of selenium bioreduction in a uranium-contaminated aquifer Environmental microbiology reports 5 3 444--452

Wilkins, Mike James, Wrighton, Kelly Catherine, Nicora, Carrie D, Williams, Kenneth H, McCue, Lee Ann, Handley, Kim M, Miller, Chris S, Giloteaux, Ludovic, Montgomery, Alison P, Lovley, Derek R, others, , (2013) Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface PLoS One 8 3 e57819

Luef, Birgit, Fakra, Sirine C, Csencsits, Roseann, Wrighton, Kelly Catherine, Williams, Kenneth H, Wilkins, Mike James, Downing, Kenneth H, Long, Philip E, Comolli, Luis R, Banfield, Jillian F, (2013) Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth The ISME journal 7 2 338

Holmes, Dawn E, Giloteaux, Ludovic, Barlett, Melissa, Chavan, Milind A, Smith, Jessica A, Williams, Kenneth H, Wilkins, Mike James, Long, Philip, Lovley, Derek R, (2013) Molecular analysis of the in situ growth rates of subsurface Geobacter species Appl. Environ. Microbiol. 79 5 1646--1653

Konopka, Allan, Wilkins, Mike James, (2012) Application of meta-transcriptomics and--proteomics to analysis of in situ physiological state Frontiers in microbiology 3 184

Yabusaki, Steven B, Fang, Yilin, Wilkins, Mike James, Long, Philip E, (2012) Coupled-process modeling of a uranium bioremediation field experiment Mineralog. Magaz. 76 2562

Fang, Yilin, Wilkins, Mike James, Yabusaki, Steven B, Lipton, Mary S, Long, Philip E, (2012) Evaluation of a genome-scale in silico metabolic model of geobacter metallireducens using proteomic data from a field biostimulation experiment Applied and environmental microbiology AEM--01795

Wrighton, Kelly Catherine, Thomas, Brian C, Sharon, Itai, Miller, Christopher S, Castelle, Cindy J, VerBerkmoes, Nathan C, Wilkins, Mike James, Hettich, Robert L, Lipton, Mary S, Williams, Kenneth H, others, , (2012) Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla Science 337 6102 1661--1665

Campbell, Kate M, Kukkadapu, Ravi K, Qafoku, NP, Peacock, Aaron D, Lesher, E, Williams, Kenneth H, Bargar, John R, Wilkins, Mike James, Figueroa, L, Ranville, James, others, , (2012) Geochemical, mineralogical and microbiological characteristics of sediment from a naturally reduced zone in a uranium-contaminated aquifer Applied geochemistry 27 8 1499--1511

Handley, Kim M, Wrighton, Kelly Catherine, Piceno, Yvette M, Andersen, Gary L, DeSantis, Todd Z, Williams, Kenneth H, Wilkins, Mike James, N'guessan, A Lucie, , Peacock, Aaron, Bargar, John, others, , (2012) High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment FEMS microbiology ecology 81 1 188--204

Pearce, Carolyn I, Wilkins, Mike James, Zhang, Changyong, Heald, Steve M, Fredrickson, Jim K, Zachara, John M, (2012) Pore-scale characterization of biogeochemical controls on iron and uranium speciation under flow conditions Environmental science \& technology 46 15 7992--8000

Webb-Robertson, Bobbie-Jo M, Bailey, Vanessa L, Fansler, Sarah J, Wilkins, Mike James, Hess, Nancy J, (2012) Spectral signatures for the classification of microbial species using Raman spectra Analytical and bioanalytical chemistry 404 2 563--572

Chauvign\'e-Hines, Lacie M, , Anderson, Lindsey N, Weaver, Holly M, Brown, Joseph N, Koech, Phillip K, Nicora, Carrie D, Hofstad, Beth A, Smith, Richard D, Wilkins, Mike James, Callister, Stephen J, others, , (2012) Suite of activity-based probes for cellulose-degrading enzymes Journal of the American Chemical Society 134 50 20521--20532

Williams, Kenneth H, Long, Philip E, Davis, James A, Wilkins, Mike James, N'Guessan, A Lucie, , Steefel, Carl I, Yang, Li, Newcomer, Darrell, Spane, Frank A, Kerkhof, Lee J, others, , (2011) Acetate availability and its influence on sustainable bioremediation of uranium-contaminated groundwater Geomicrobiology Journal 28 5-6 519--539

Campbell, Kate M, Davis, JA, Bargar, J, Giammar, D, Bernier-Latmani, Rizlan, Kukkadapu, R, Williams, KH, Veramani, H, Ulrich, K-U, Stubbs, J, others, , (2011) Composition, stability, and measurement of reduced uranium phases for groundwater bioremediation at Old Rifle, CO Applied geochemistry 26 S167--S169

Wilkins, Mike James, Callister, Stephen J, Miletto, Marzia, Williams, Kenneth H, Nicora, Carrie D, Lovley, Derek R, Long, Philip E, Lipton, Mary S, (2011) Development of a biomarker for Geobacter activity and strain composition; Proteogenomic analysis of the citrate synthase protein during bioremediation of U (VI) Microbial biotechnology 4 1 55--63

Callister, Stephen J, Wilkins, Mike James, Nicora, Carrie D, Williams, Kenneth H, Banfield, Jillian F, VerBerkmoes, Nathan C, Hettich, Robert L, N’Guessan, Lucie, Mouser, Paula J, Elifantz, Hila, others, , (2010) Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles Environmental science \& technology 44 23 8897--8903

Elifantz, Hila, N'Guessan, Lucie A, Mouser, Paula J, Williams, Kenneth H, Wilkins, Mike James, Risso, Carla, Holmes, Dawn E, Long, Philip E, Lovley, Derek R, (2010) Expression of acetate permease-like (apl) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations FEMS microbiology ecology 73 3 441--449

Wilkins, Mike James, Livens, Francis R, Vaughan, David J, Lloyd, Jonathan R, Beadle, Ian, Small, Joe S, (2010) Fe (III) reduction in the subsurface at a low-level radioactive waste disposal site Geomicrobiology Journal 27 3 231--239

N'guessan, A Lucie, , Elifantz, Hila, Nevin, Kelly P, Mouser, Paula J, Meth\'e, Barbara, , Woodard, Trevor L, Manley, Kimberly, Williams, Kenneth H, Wilkins, Mike James, Larsen, Joern T, others, , (2010) Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer The ISME journal 4 2 253

Williams, Kenneth H, Kemna, Andreas, Wilkins, Mike James, Druhan, Jennifer, Arntzen, Evan, N’Guessan, A Lucie, , Long, Philip E, Hubbard, Susan S, Banfield, Jillian F, (2009) Geophysical monitoring of coupled microbial and geochemical processes during stimulated subsurface bioremediation Environmental science \& technology 43 17 6717--6723

Mouser, Paula J, N’Guessan, A Lucie, , Elifantz, Hila, Holmes, Dawn E, Williams, Kenneth H, Wilkins, Mike James, Long, Philip E, Lovley, Derek R, (2009) Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater Environmental science \& technology 43 12 4386--4392

Li, Li, Steefel, Carl I, Williams, Kenneth H, Wilkins, Mike James, Hubbard, Susan S, (2009) Mineral transformation and biomass accumulation associated with uranium bioremediation at Rifle, Colorado Environmental science \& technology 43 14 5429--5435

Wilkins, Mike James, VerBerkmoes, Nathan C, Williams, Kenneth H, Callister, Stephen J, Mouser, Paula J, Elifantz, Hila, Thomas, Brian C, Nicora, Carrie D, Shah, Manesh B, Abraham, Paul, others, , (2009) Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation Applied and environmental microbiology 75 20 6591--6599

Campbell, KM, Qafoku, NP, Kukkadapu, R, Williams, KH, Lesher, E, Figueroa, L, Peacock, A, Wilkins, MJ, Davis, JA, Icenhower, J, others, , (2008) Characterizing the extent and role of natural subsurface bioreduction in a uranium-contaminated aquifer Geochimica et Cosmochimica Acta Supplement 72 A133

Melton, Scott J, Yu, Haini, Ali, Mehnaaz F, Williams, Kenneth H, Wilkins, Mike James, Long, Philip E, Blake, Diane A, (2008) "Detection of hexavalent uranium with inline and field-portable immunosensors" Springer, Berlin, Heidelberg 27--36

Hand, Victoria L, Lloyd, Jonathan R, Vaughan, David J, Wilkins, Mike James, Boult, Stephen, (2008) Experimental studies of the influence of grain size, oxygen availability and organic carbon availability on bioclogging in porous media Environmental science \& technology 42 5 1485--1491

Wilkins, Mike James, Wincott, Paul L, Vaughan, David J, Livens, Francis R, Lloyd, Jonathan R, (2007) Growth of Geobacter sulfurreducens on poorly crystalline Fe (III) oxyhydroxide coatings Geomicrobiology Journal 24 3-4 199--204

Wilkins, MJ, Livens, FR, Vaughan, DJ, Beadle, I, Lloyd, JR, , (2007) The influence of microbial redox cycling on radionuclide mobility in the subsurface at a low-level radioactive waste storage site Geobiology 5 3 293--301

Davis, James A, Curtis, Gary P, Wilkins, Mike James, Kohler, Matthias, Fox, Patricia, Naftz, David L, Lloyd, Jonathan R, (2006) Processes affecting transport of uranium in a suboxic aquifer Physics and Chemistry of the Earth, Parts A/B/C 31 10-14 548--555

Wilkins, Mike James, Livens, Francis R, Vaughan, David J, Lloyd, Jonathan R, (2006) The impact of Fe (III)-reducing bacteria on uranium mobility Biogeochemistry 78 2 125--150

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