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Rodr\'\iguez-Ramos, Josu\'e A, , Borton, Mikayla A, McGivern, Bridget Byrnes, Smith, Garrett Joseph, Solden, Lindsey M, Shaffer, Michael Tooley, Daly, Rebecca A, Purvine, Samuel O, Nicora, Carrie D, Eder, Elizabeth K, others, , (2022) Genome-resolved metaproteomics decodes the microbial and viral contributions to coupled carbon and nitrogen cycling in river sediments Msystems 7 4 e00516--22

Amundson, Kaela Kay, Borton, Mikayla A, Daly, Rebecca A, Hoyt, David W, Wong, Allison, Eder, Elizabeth, Moore, Joesph, Wunch, Kenneth, Wrighton, Kelly Catherine, Wilkins, Michael, (2022) Metabolic exchanges and viral predation guide microbial communities in deep fractured shales

Amundson, Kaela Kay, Borton, Mikayla A, Daly, Rebecca A, Hoyt, David W, Wong, Allison, Eder, Elizabeth, Moore, Joseph, Wunch, Kenneth, Wrighton, Kelly Catherine, Wilkins, Michael J, (2022) Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation Microbiome 10 1 1--15

Baniasad, Maryam, Kim, Yongseok, Shaffer, Michael Tooley, Sabag-Daigle, Anice, Leleiwi, Ikaia Clinton, Daly, Rebecca A, Ahmer, Brian MM, Wrighton, Kelly Catherine, Wysocki, Vicki H, (2022) Optimization of proteomics sample preparation for identification of host and bacterial proteins in mouse feces Analytical and Bioanalytical Chemistry 414 7 2317--2331

Rubinstein, Rebecca L, Borton, Mikayla A, Zhou, Haiyan, Shaffer, Michael Tooley, Hoyt, David W, Stegen, James, Henry, Christopher S, Wrighton, Kelly Catherine, Versteeg, Roelof, (2022) ORT: a workflow linking genome-scale metabolic models with reactive transport codes Bioinformatics 38 3 778--784

Borton, Mikayla A, Shaffer, Michael Tooley, Hoyt, David W, Jiang, Ruisheng, Ellenbogen, Jared, Purvine, Samuel O, Nicora, Carrie D, Eder, Elizabeth, Wong, Allison, Smulian, A George, , others, , (2022) Targeted curation of the gut microbial gene content modulating human cardiovascular disease bioRxiv 2022--06

Seitz, Valerie A, McGivern, Bridget Byrnes, Borton, Mikayla A, Chaparro, Jacqueline Michelle, Daly, Rebecca A, Sheflin, Amy Marie, Kresovich, Stephen, Shields, Lindsay, Schipanski, Meagan Erin, Wrighton, Kelly Catherine, Prenni, Jessica E, (2022) Variation in root exudate composition influences soil microbiome membership and function Applied and Environmental Microbiology

Welch, Susan A, Sheets, Julia M, Daly, Rebecca A, Hanson, Andrea, Sharma, Shikha, Darrah, Thomas, Olesik, John, Lutton, Anthony, Mouser, Paula J, Wrighton, Kelly Catherine, others, , (2021) Comparative geochemistry of flowback chemistry from the Utica/Point Pleasant and Marcellus formations Chemical Geology 564 120041

McGivern, Bridget Byrnes, Tfaily, Malak M, Borton, Mikayla A, Kosina, Suzanne M, Daly, Rebecca A, Nicora, Carrie D, Purvine, Samuel O, Wong, Allison R, Lipton, Mary S, Hoyt, David W, others, , (2021) Decrypting bacterial polyphenol metabolism in an anoxic wetland soil Nature communications 12 1 1--16

Villa, Jorge A, Ju, Yang, Yazbeck, Theresia, Waldo, Sarah, Wrighton, Kelly Catherine, Bohrer, Gil, (2021) Ebullition dominates methane fluxes from the water surface across different ecohydrological patches in a temperate freshwater marsh at the end of the growing season Science of The Total Environment 767 144498

Rodr\'\iguez-Ramos, Josu\'e A, , Borton, Mikayla A, McGivern, Bridget Byrnes, Smith, Garrett Joseph, Solden, Lindsey M, Shaffer, Michael Tooley, Daly, Rebecca A, Purvine, Samuel O, Nicora, Carrie D, Eder, Elizabeth K, others, , (2021) Microbial Genome-Resolved Metaproteomic Analyses Frame Intertwined Carbon and Nitrogen Cycles in River Hyporheic Sediments

Ewens, Sophia D, Gomberg, Alexa FS, Barnum, Tyler P, Borton, Mikayla A, Carlson, Hans K, Wrighton, Kelly Catherine, Coates, John D, (2021) The diversity and evolution of microbial dissimilatory phosphite oxidation Proceedings of the National Academy of Sciences 118 11

North, Justin A, Narrowe, Adrienne B, Xiong, Weili, Byerly, Kathryn M, Zhao, Guanqi, Young, Sarah J, Murali, Srividya, Wildenthal, John A, Cannon, William R, Wrighton, Kelly Catherine, others, , (2020) A nitrogenase-like enzyme system catalyzes methionine, ethylene, and methane biogenesis Science 369 6507 1094--1098

Villa, Jorge A, Ju, Yang, Smith, Garrett Joseph, Angle, Jordan C, Renteria, Lupita, Arntzen, Evan, Harding, Samuel F, Stegen, James C, Wrighton, Kelly Catherine, Bohrer, Gil, (2020) "Chamber Flux and Porewater Concentration of CH4, CO2 and N2O, 2018, Colombia River bank at the Hanford site, WA, USA" Environmental System Science Data Infrastructure for a Virtual Ecosystem~…

Al-Shayeb, Basem, Sachdeva, Rohan, Chen, Lin-Xing, Ward, Fred, Munk, Patrick, Devoto, Audra, Castelle, Cindy J, Olm, Matthew R, Bouma-Gregson, Keith, Amano, Yuki, others, , (2020) Clades of huge phages from across Earth’s ecosystems Nature 578 7795 425--431

Shaffer, Michael Tooley, Borton, Mikayla A, McGivern, Bridget Byrnes, Zayed, Ahmed A, La Rosa, Sabina Leanti, Solden, Lindsey M, Liu, Pengfei, Narrowe, Adrienne B, Rodr\'\iguez-Ramos, Josu\'e, , Bolduc, Benjamin, others, , (2020) DRAM for distilling microbial metabolism to automate the curation of microbiome function Nucleic acids research 48 16 8883--8900

Danczak, Robert E, Daly, RA, Borton, MA, Stegen, James C, Roux, Simon, Wrighton, Kelly Catherine, Wilkins, MJ, (2020) Ecological assembly processes are coordinated between bacterial and viral communities in fractured shale ecosystems Msystems 5 2

Danczak, Robert E, Daly, RA, Borton, MA, Stegen, James C, Roux, Simon, Wrighton, Kelly Catherine, Wilkins, MJ, (2020) Ecological assembly processes are coordinated between bacterial and viral communities in fractured shale ecosystems Msystems 5 2

Cliffe, Lisa, Nixon, Sophie, Taylor, Kevin G, Boothman, Chris, Wilkins, Michael J, Wrighton, Kelly Catherine, Lloyd, Jonathan Richard, Eden, Bob, Daly, Rebecca A, (2020) Identification of persistent sulfidogenic bacteria in shale gas produced waters Frontiers in microbiology 11 286

Cliffe, Lisa, Nixon, Sophie, Taylor, Kevin G, Boothman, Chris, Wilkins, Michael J, Wrighton, Kelly Catherine, Lloyd, Jonathan Richard, Eden, Bob, Daly, Rebecca A, (2020) Identification of persistent sulfidogenic bacteria in shale gas produced waters Frontiers in microbiology 11 286

Villa, Jorge A, Smith, Garrett Joseph, Ju, Yang, Renteria, Lupita, Angle, Jordan C, Arntzen, Evan, Harding, Samuel F, Ren, Huiying, Chen, Xingyuan, Sawyer, Audrey H, others, , (2020) Methane and nitrous oxide porewater concentrations and surface fluxes of a regulated river Science of The Total Environment 715 136920

Villa, Jorge A, Ju, Yang, Stephen, Taylor, Rey-Sanchez, Camilo, Wrighton, Kelly Catherine, Bohrer, Gil, (2020) Plant-mediated methane transport in emergent and floating-leaved species of a temperate freshwater mineral-soil wetland Limnology and Oceanography 65 7 1635--1650

Reeves, Savanah G, Somogyi, Arpad, Zeller, Wayne E, Ramelot, Theresa A, Wrighton, Kelly Catherine, Hagerman, Ann E, (2020) Proanthocyanidin Structural Details Revealed by Ultrahigh Resolution FT-ICR MALDI-Mass Spectrometry, 1H--13C HSQC NMR, and Thiolysis-HPLC--DAD Journal of Agricultural and Food Chemistry 68 47 14038--14048

Miller, Hannah, Dias, Kandis, Hare, Hannah, Borton, Mikayla A, Blotevogel, Jens, Danforth, Cloelle, Wrighton, Kelly Catherine, Ippolito, James A, Borch, Thomas, (2020) Reusing oil and gas produced water for agricultural irrigation: Effects on soil health and the soil microbiome Science of the Total Environment 722 137888

Miller, Hannah, Dias, Kandis, Hare, Hannah, Borton, Mikayla A, Blotevogel, Jens, Danforth, Cloelle, Wrighton, Kelly Catherine, Ippolito, James A, Borch, Thomas, (2020) Reusing oil and gas produced water for agricultural irrigation: Effects on soil health and the soil microbiome Science of The Total Environment 137888

Ewens, Sophia D, Gomberg, Alexa, Barnum, Tyler, Borton, Mikayla, Carlson, H, Wrighton, Kelly Catherine, Coates, John, (2020) The Diversity and Evolution of Microbial Dissimilatory Phosphite Oxidation bioRxiv

Goldman, Amy E, Chu, Rosalie K, Danczak, Robert E, Daly, Rebecca A, Fansler, Sarah, Garayburu-Caruso, Vanessa A, Graham, Emily B, McCall, Marcy L, Ren, Huiying, Renteria, Lupita, others, , (2020) "WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Sediment FTICR-MS, NPOC, and Aerobic Respiration" Environmental System Science Data Infrastructure for a Virtual Ecosystem~…

Miller, Hannah, Dias, Kandis, Hare, Hannah, Borton, Mikayla A., Blotevogel, Jens, Danforth, Cloelle, Wrighton, Kelly Catherine, Ippolito, James A., Borch, Thomas, (2020) Reusing oil and gas produced water for agricultural irrigation: Effects on soil health and the soil microbiome Science of The Total Environment 722 137888

Nixon, Sophie L., Daly, Rebecca A., Borton, Mikayla A., Solden, Lindsey M., Welch, Susan A., Cole, David R., Mouser, Paula J., Wilkins, Michael J., Wrighton, Kelly Catherine, (2019) Genome-Resolved Metagenomics Extends the Environmental Distribution of the Verrucomicrobia Phylum to the Deep Terrestrial Subsurface mSphere 4 6

Roux, Simon, Krupovic, Mart, Daly, Rebecca A, Borges, Adair L, Nayfach, Stephen, Schulz, Frederik, Sharrar, Allison, Carnevali, Paula B Matheus, Cheng, Jan-Fang, Ivanova, Natalia N, others, , (2019) Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes Nature microbiology 4 11 1895--1906

Booker, Anne E, Hoyt, David W, Meulia, Tea, Eder, Elizabeth, Nicora, Carrie D, Purvine, Samuel O, Daly, Rebecca A, Moore, Joseph Daniel, Wunch, Kenneth, Pfiffner, Susan M, others, , (2019) Deep-subsurface pressure stimulates metabolic plasticity in shale-colonizing Halanaerobium spp. Applied and environmental microbiology 85 12

Wunch, Kenneth, Moore, Joseph Daniel, Massie-Schuh, Ella, Wrighton, Kelly Catherine, Wilkins, Michael, Daly, Rebecca, (2019) Field audits optimize Anadarko basin operator’s microbial control program OIL \& GAS JOURNAL 117 9 51--58

Nixon, Sophie L, Daly, Rebecca A, Borton, Mikayla A, Solden, Lindsey M, Welch, Susan A, Cole, David R, Mouser, Paula J, Wilkins, Michael J, Wrighton, Kelly Catherine, (2019) Genome-resolved metagenomics extends the environmental distribution of the verrucomicrobia phylum to the deep terrestrial subsurface Msphere 4 6

Evans, Morgan V, Sumner, Andrew J, Daly, Rebecca A, Luek, Jenna L, Plata, Desiree L, Wrighton, Kelly Catherine, Mouser, Paula J, (2019) Hydraulically fractured natural-gas well microbial communities contain genomic halogenation and dehalogenation potential Environmental Science \& Technology Letters 6 10 585--591

Smith, Garrett Joseph, Wrighton, Kelly Catherine, (2019) Metagenomic approaches unearth methanotroph phylogenetic and metabolic diversity Curr Issues Mol Biol 33 57--84

Roux, Simon, Adriaenssens, Evelien M, Dutilh, Bas E, Koonin, Eugene V, Kropinski, Andrew M, Krupovic, Mart, Kuhn, Jens H, Lavigne, Rob, Brister, J Rodney, Varsani, Arvind, others, , (2019) Minimum information about an uncultivated virus genome (MIUViG) Nature biotechnology 37 1 29--37

Villa, Jorge A, Ju, Yang, Vines, Chante, Rey-Sanchez, Camilo, Morin, Timothy H, Wrighton, Kelly Catherine, Bohrer, Gil, (2019) Relationships between methane and carbon dioxide fluxes in a temperate cattail-dominated freshwater wetland Journal of Geophysical Research: Biogeosciences 124 7 2076--2089

Manna, Kathleen, Moore, Joseph Daniel, Wunch, Kenneth, Massie-Schuh, Ella, Daly, Rebecca A, Wrighton, Kelly Catherine, Wilkins, Michael, (2019) "Relative Performance of Various 16S iTag Amplicon Sequencing Primer Pairs in Profiling Microbial Communities Relevant to Oil \& Gas Operations" 1--15

Manna, Kathleen, Moore, Joseph Daniel, Wunch, Kenneth, Massie-Schuh, Ella, Daly, Rebecca A, Wrighton, Kelly Catherine, Wilkins, Michael, others, , (2019) "Relative Performance of Various 16S iTag Amplicon Sequencing Primer Pairs in Profiling Microbial Communities Relevant to Oil \& Gas Operations"

Narrowe, Adrienne B, Borton, Mikayla A, Hoyt, David W, Smith, Garrett Joseph, Daly, Rebecca A, Angle, Jordan C, Eder, Elizabeth K, Wong, Allison R, Wolfe, Richard Alan, Pappas, Alexandra, others, , (2019) Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils Msystems 4 6

Daly, Rebecca A, Roux, Simon, Borton, Mikayla A, Morgan, David M, Johnston, Michael D, Booker, Anne E, Hoyt, David W, Meulia, Tea, Wolfe, Richard Alan, Hanson, Andrea, others, , (2019) Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing Nature microbiology 4 2 352--361

Daly, Reb Anne, Roux, S., Borton, Kayla Ann, Morgan, D. M., Johnston, M. D., Booker, A. E., Hoyt, D. W., Meulia, T., Wolfe, R. A., Hanson, Andrea, Mouser, P. J., Sullivan, M. B., Wrighton, Kelly Catherine, Wilkins, Mike James, (2019) Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing Nature Microbiology 4 352–361

Daly, Reb Anne, Wrighton, Kelly Catherine, Wilkins, Mike James, (2018) "Characterizing the Deep Terrestrial Subsurface Microbiome" Humana Press, New York, NY 1--15

Borton, Kayla Ann, Hoyt, David W, Roux, Simon, Daly, Reb Anne, Welch, Susan A, Nicora, Carrie D, Purvine, Samuel, Eder, Elizabeth K, Hanson, Andrea, Sheets, Julie M, others, , (2018) Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales Proceedings of the National Academy of Sciences 115 28 E6585--E6594

Rey-Sanchez, AC, Morin, TH, Stefanik, KC, Wrighton, Kelly Catherine, Bohrer, G, (2018) Determining total emissions and environmental drivers of methane flux in a Lake Erie estuarine marsh Ecological Engineering 114 7--15

Tummings, Shantal, Panescu, Jenny, Daly, Reb Anne, Wrighton, Kelly Catherine, Mouser, Paula J, (2018) Draft Genome Sequences of Marinobacter Strains Recovered from Utica Shale-Produced Fluids Genome announcements 6 14 e00155--18

Panescu, Jenny, Daly, Reb Anne, Wrighton, Kelly Catherine, Mouser, Paula J, (2018) Draft Genome Sequences of Two Chemosynthetic Arcobacter Strains Isolated from Hydraulically Fractured Wells in Marcellus and Utica Shales Genome announcements 6 20 e00159--18

McLean, Jeffrey S, Bor, Batbileg, To, Thao T, Liu, Quanhui, Kearns, Kristopher A, Solden, Lindsey M, Wrighton, Kelly Catherine, He, Xuesong, Shi, Wenyuan, (2018) Evidence of independent acquisition and adaption of ultra-small bacteria to human hosts across the highly diverse yet reduced genomes of the phylum Saccharibacteria bioRxiv 258137

Emerson, Joanne B, Roux, Simon, Brum, Jennifer R, Bolduc, Benjamin, Woodcroft, Ben J, Jang, Ho Bin, Singleton, Caitlin M, Solden, Lindsey M, Naas, Adrian E, Boyd, Joel A, others, , (2018) Host-linked soil viral ecology along a permafrost thaw gradient Nature microbiology 3 8 870

Sabag-Daigle, Anice, Wu, Jikang, Borton, Kayla Ann, Sengupta, Anindita, Gopalan, Venkat, Wrighton, Kelly Catherine, Wysocki, Vicki H, Ahmer, Brian MM, (2018) Identification of bacterial species that can utilize fructose-asparagine Appl. Environ. Microbiol. 84 5 e01957--17

Solden, Lindsey M, Naas, Adrian E, Roux, Simon, Daly, Reb Anne, Collins, William B, Nicora, Carrie D, Purvine, Sam O, Hoyt, David W, Sch\"uckel, Julia, , J\orgensen, Bodil, , others, , (2018) Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem Nature Microbiology 3 11 1274

Wu, Jikang, Sabag-Daigle, Anice, Borton, Kayla Ann, Kop, Linnea FM, Szkoda, Blake E, Kaiser, Brooke L Deatherage, Lindemann, Stephen R, Renslow, Ryan S, Wei, Siwei, Nicora, Carrie D, others, , (2018) Salmonella-mediated inflammation eliminates competitors for fructose-asparagine in the gut. Infection and immunity IAI--00945

Trubl, Gareth, Jang, Ho Bin, Roux, Simon, Emerson, Joanne B, Solonenko, Natalie, Vik, Dean R, Solden, Lindsey, Ellenbogen, Jared, Runyon, Alexander T, Bolduc, Benjamin, others, , (2018) Soil viruses are underexplored players in ecosystem carbon processing MSystems 3 5 e00076--18

Naas, Adrian Erts\aas, , Solden, Lindsey M, Norbeck, Angela D, Brewer, H, Hagen, Live Heldal, Heggenes, IM, McHardy, Alice Carolyn, Mackie, Roderick Ian, Pa\vsa-Toli\'c, L, , Arntzen, Magnus \Overlie, , others, , (2018) “Candidatus Paraporphyromonas polyenzymogenes” encodes multi-modular cellulases linked to the type IX secretion system Microbiome 6 1 44

Sharma, Shikha, Carr, Timothy R, Mouser, Paula J, Wrighton, Kelly Catherine, Cole, David, Wilkins, Mike James, Darrah, Thomas, Hakala, Alexandra, (2017) "Biogeochemical Characterization of Core, Fluids, and Gas at MSEEL Site" 847--854

Borton, Kayla Ann, Sabag-Daigle, Anice, Wu, Jikang, Solden, Lindsey M, O’Banion, Bridget S, Daly, Reb Anne, Wolfe, Richard Alan, Gonzalez, Juan F, Wysocki, Vicki H, Ahmer, Brian MM, others, , (2017) Chemical and pathogen-induced inflammation disrupt the murine intestinal microbiome Microbiome 5 1 47

Booker, Anne E, Johnston, Michael D, Daly, Reb Anne, Wrighton, Kelly Catherine, Wilkins, Mike James, (2017) Draft Genome Sequences of Multiple Frackibacter Strains Isolated from Hydraulically Fractured Shale Environments Genome announcements 5 32 e00608--17

Solden, Lindsey M, Wrighton, Kelly Catherine, (2017) Finding life’s missing pieces Nature microbiology 2 11 1458

Narrowe, Adrienne B, Angle, Jordan C, Daly, Reb Anne, Stefanik, Kay C, Wrighton, Kelly Catherine, Miller, Christopher S, (2017) High-resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils Environmental microbiology 19 6 2192--2209

Danczak, RE, Johnston, MD, Kenah, Christopher, Slattery, Michael, Wrighton, Kelly Catherine, Wilkins, MJ, (2017) Members of the Candidate Phyla Radiation are functionally differentiated by carbon-and nitrogen-cycling capabilities Microbiome 5 1 112

Angle, Jordan C, Morin, Timothy H, Solden, Lindsey M, Narrowe, Adrienne B, Smith, Garrett Joseph, Borton, Kayla Ann, Rey-Sanchez, Camilo, Daly, Reb Anne, Mirfenderesgi, Golnazalsdat, Hoyt, David W, others, , (2017) Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions Nature Communications 8 1 1567

Solden, Lindsey M, Hoyt, David W, Collins, William B, Plank, Johanna E, Daly, Reb Anne, Hildebrand, Erik, Beavers, Timothy J, Wolfe, Richard Alan, Nicora, Carrie D, Purvine, Sam O, others, , (2017) New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11 The ISME journal 11 3 691

Booker, Anne E, Borton, Kayla Ann, Daly, Reb Anne, Welch, Susan A, Nicora, Carrie D, Hoyt, David W, Wilson, Travis, Purvine, Samuel O, Wolfe, Richard Alan, Sharma, Shikha, others, , (2017) Sulfide generation by dominant Halanaerobium microorganisms in hydraulically fractured shales mSphere 2 4 e00257--17

Russell, Joseph A, Le\'on-Zayas, Rosa, , Wrighton, Kelly Catherine, Biddle, Jennifer F, (2016) Deep subsurface life from North Pond: enrichment, isolation, characterization and genomes of heterotrophic bacteria Frontiers in microbiology 7 678

Varaljay, Vanessa A, Satagopan, Sriram, North, Justin A, Witte, Brian, Dourado, Manuella N, Anantharaman, Karthik, Arbing, Mark A, McCann, Shelley Hoeft, Oremland, Ronald S, Banfield, Jillian F, others, , (2016) Functional metagenomic selection of ribulose 1, 5-bisphosphate carboxylase/oxygenase from uncultivated bacteria Environmental microbiology 18 4 1187--1199

Mouser, Paula J, Borton, Kayla Ann, Darrah, Thomas H, Hartsock, Angela, Wrighton, Kelly Catherine, (2016) Hydraulic fracturing offers view of microbial life in the deep terrestrial subsurface FEMS microbiology ecology 92 11

Borton, Kayla Ann, Daly, Reb Anne, Morgan, David M, Booker, Anne E, Hoyt, David W, Mouser, Paula J, Sharma, Shikha, Wilkins, Mike James, Wrighton, Kelly Catherine, (2016) "Methanohalophilus is the Dominant Source of Biogenic Methane in Hydraulically Fractured Shales"

Daly, Reb Anne, Borton, Kayla Ann, Wilkins, Mike James, Hoyt, David W, Kountz, Duncan J, Wolfe, Richard Alan, Welch, Susan A, Marcus, Daniel N, Trexler, Ryan V, MacRae, Jean D, others, , (2016) Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales Nature microbiology 1 10 16146

Wrighton, Kelly Catherine, Castelle, Cindy J, Varaljay, Vanessa A, Satagopan, Sriram, Brown, Christopher T, Wilkins, Mike James, Thomas, Brian C, Sharon, Itai, Williams, Kenneth H, Tabita, F Robert, others, , (2016) RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria The ISME journal 10 11 2702

Evert, Mary, Panescu, Jenny, Daly, Reb Anne, Welch, Susan A, Hespen, Jessica, Sharma, Shikha, Cole, David R, Darrah, Thomas H, Wilkins, Mike James, Wrighton, Kelly Catherine, others, , (2016) "Temporal Changes in Fluid Biogeochemistry and Microbial Cell Abundance after Hydraulic Fracturing in Marcellus Shale"

Solden, Lindsey, Lloyd, Karen, Wrighton, Kelly Catherine, (2016) The bright side of microbial dark matter: lessons learned from the uncultivated majority Current opinion in microbiology 31 217--226

Merkley, Eric D, Wrighton, Kelly Catherine, Castelle, Cindy J, Anderson, Brian J, Wilkins, Mike James, Shah, Vega, Arbour, Tyler, Brown, Joseph N, Singer, Steven W, Smith, Richard D, others, , (2015) Changes in protein expression across laboratory and field experiments in Geobacter bemidjiensis Journal of proteome research 14 3 1361--1375

Handley, Kim M, Wrighton, Kelly Catherine, Miller, Christopher S, Wilkins, Mike James, Kantor, Rose S, Thomas, Brian C, Williams, Kenneth H, Gilbert, Jack A, Long, Philip E, Banfield, Jillian F, (2015) Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points Environmental microbiology 17 3 622--636

Luef, Birgit, Frischkorn, Kyle R, Wrighton, Kelly Catherine, Holman, Hoi-Ying N, Birarda, Giovanni, Thomas, Brian C, Singh, Andrea, Williams, Kenneth H, Siegerist, Cristina E, Tringe, Susannah G, others, , (2015) Diverse uncultivated ultra-small bacterial cells in groundwater Nature communications 6 6372

Holmes, Dawn E, Giloteaux, Ludovic, Chaurasia, Akhilesh K, Williams, Kenneth H, Luef, Birgit, Wilkins, Mike James, Wrighton, Kelly Catherine, Thompson, Courtney A, Comolli, Luis R, Lovley, Derek R, (2015) Evidence of Geobacter-associated phage in a uranium-contaminated aquifer The ISME journal 9 2 333

Castelle, Cindy J, Wrighton, Kelly Catherine, Thomas, Brian C, Hug, Laura A, Brown, Christopher T, Wilkins, Mike James, Frischkorn, Kyle R, Tringe, Susannah G, Singh, Andrea, Markillie, Lye Meng, others, , (2015) Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling Current biology 25 6 690--701

Brown, Christopher T, Hug, Laura A, Thomas, Brian C, Sharon, Itai, Castelle, Cindy J, Singh, Andrea, Wilkins, Mike James, Wrighton, Kelly Catherine, Williams, Kenneth H, Banfield, Jillian F, (2015) Unusual biology across a group comprising more than 15\% of domain Bacteria Nature 523 7559 208

Wrighton, Kelly Catherine, Castelle, Cindy J, Wilkins, Mike James, Hug, Laura A, Sharon, Itai, Thomas, Brian C, Handley, Kim M, Mullin, Sean W, Nicora, Carrie D, Singh, Andrea, others, , (2014) Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer The ISME journal 8 7 1452

Wilkins, Mike James, Daly, Reb Anne, Mouser, Paula J, Trexler, Ryan, Wrighton, Kelly Catherine, Sharma, Shikha, Cole, David R, Biddle, Jennifer F, Denis, Elizabeth, Fredrickson, Jim K, others, , (2014) Trends and future challenges in sampling the deep terrestrial biosphere Frontiers in microbiology 5 481

Giloteaux, Ludovic, Holmes, Dawn E, Williams, Kenneth H, Wrighton, Kelly Catherine, Wilkins, Mike James, Montgomery, Alison P, Smith, Jessica A, Orellana, Roberto, Thompson, Courtney A, Roper, Thomas J, others, , (2013) Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation The ISME journal 7 2 370

Hug, Laura A, Castelle, Cindy J, Wrighton, Kelly Catherine, Thomas, Brian C, Sharon, Itai, Frischkorn, Kyle R, Williams, Kenneth H, Tringe, Susannah G, Banfield, Jillian F, (2013) Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling Microbiome 1 1 22

Holmes, Dawn E, Giloteaux, Ludovic, Williams, Kenneth H, Wrighton, Kelly Catherine, Wilkins, Mike James, Thompson, Courtney A, Roper, Thomas J, Long, Philip E, Lovley, Derek R, (2013) Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater The ISME journal 7 7 1286

Castelle, Cindy J, Hug, Laura A, Wrighton, Kelly Catherine, Thomas, Brian C, Williams, Kenneth H, Wu, Dongying, Tringe, Susannah G, Singer, Steven W, Eisen, Jonathan A, Banfield, Jillian F, (2013) Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment Nature communications 4 2120

Wilkins, Mike James, Wrighton, Kelly Catherine, Nicora, Carrie D, Williams, Kenneth H, McCue, Lee Ann, Handley, Kim M, Miller, Chris S, Giloteaux, Ludovic, Montgomery, Alison P, Lovley, Derek R, others, , (2013) Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface PLoS One 8 3 e57819

Luef, Birgit, Fakra, Sirine C, Csencsits, Roseann, Wrighton, Kelly Catherine, Williams, Kenneth H, Wilkins, Mike James, Downing, Kenneth H, Long, Philip E, Comolli, Luis R, Banfield, Jillian F, (2013) Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth The ISME journal 7 2 338

Miller, Christopher S, Handley, Kim M, Wrighton, Kelly Catherine, Frischkorn, Kyle R, Thomas, Brian C, Banfield, Jillian F, (2013) Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments PloS one 8 2 e56018

Kantor, Rose S, Wrighton, Kelly Catherine, Handley, Kim M, Sharon, Itai, Hug, Laura A, Castelle, Cindy J, Thomas, Brian C, Banfield, Jillian F, (2013) Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla MBio 4 5 e00708--13

Di Rienzi, Sara C, Sharon, Itai, Wrighton, Kelly Catherine, Koren, Omry, Hug, Laura A, Thomas, Brian C, Goodrich, Julia K, Bell, Jordana T, Spector, Timothy D, Banfield, Jillian F, others, , (2013) The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria Elife 2 e01102

Yelton, Alexis P, Williams, Kenneth H, Fournelle, John, Wrighton, Kelly Catherine, Handley, Kim M, Banfield, Jillian F, (2013) Vanadate and acetate biostimulation of contaminated sediments decreases diversity, selects for specific taxa, and decreases aqueous V5+ concentration Environmental science \& technology 47 12 6500--6509

Wrighton, Kelly Catherine, Thomas, Brian C, Sharon, Itai, Miller, Christopher S, Castelle, Cindy J, VerBerkmoes, Nathan C, Wilkins, Mike James, Hettich, Robert L, Lipton, Mary S, Williams, Kenneth H, others, , (2012) Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla Science 337 6102 1661--1665

Handley, Kim M, Wrighton, Kelly Catherine, Piceno, Yvette M, Andersen, Gary L, DeSantis, Todd Z, Williams, Kenneth H, Wilkins, Mike James, N'guessan, A Lucie, , Peacock, Aaron, Bargar, John, others, , (2012) High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment FEMS microbiology ecology 81 1 188--204

Wrighton, Kelly Catherine, Engelbrektson, Anna E, Clark, Iain C, Melnyk, Ryan A, Coates, John D, (2011) "Accentuate the positive: dissimilatory iron reduction by gram-positive bacteria" American Society of Microbiology 173--194

Wrighton, KC, Thrash, JC, Melnyk, RA, Bigi, JP, Byrne-Bailey, KG, Remis, JP, Schichnes, D, Auer, M, Chang, CJ, Coates, JD, (2011) Evidence for direct electron transfer by a Gram-positive bacterium isolated from a microbial fuel cell Applied and environmental microbiology AEM--05365

Van Trump, J Ian, Wrighton, Kelly Catherine, Thrash, J Cameron, Weber, Karrie A, Andersen, Gary L, Coates, John D, (2011) Humic acid-oxidizing, nitrate-reducing bacteria in agricultural soils Mbio 2 4 e00044--11

Yelton, Alexis Pepper, Wrighton, Kelly Catherine, Handley, Kim, Williams, Kenneth H, (2011) "Vanadium removal and reduction from biostimulated sediments and isolation of the V-reducing Comamonadaceae, strain BODI"

Wrighton, Kelly Catherine, Virdis, Bernardino, Clauwaert, Peter, Read, Suzanne T, Daly, Reb Anne, Boon, Nico, Piceno, Yvette, Andersen, Gary L, Coates, John D, Rabaey, Korneel, (2010) Bacterial community structure corresponds to performance during cathodic nitrate reduction The ISME journal 4 11 1443

Byrne-Bailey, Kathryne G, Wrighton, Kelly Catherine, Melnyk, Ryan A, Agbo, Peter, Hazen, Terry C, Coates, John D, (2010) Complete genome sequence of the electricity-producing “Thermincola potens” strain JR Journal of bacteriology 192 15 4078--4079

Engelbrektson, Anna, Kunin, Victor, Wrighton, Kelly Catherine, Zvenigorodsky, Natasha, Chen, Feng, Ochman, Howard, Hugenholtz, Philip, (2010) Experimental factors affecting PCR-based estimates of microbial species richness and evenness The ISME journal 4 5 642

Wrighton, Kelly Catherine, Coates, John D, (2009) Microbial fuel cells: plug-in and power-on microbiology Microbe 4 6 281--287

Wrighton, Kelly Catherine, Agbo, Peter, Warnecke, Falk, Weber, Karrie A, Brodie, Eoin L, DeSantis, Todd Z, Hugenholtz, Philip, Andersen, Gary L, Coates, John D, (2008) A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells The ISME journal 2 11 1146

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