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Comparative Whole Genome Analysis of Escherichia coli O157:H7 Isolates From Feedlot Cattle to Identify Genotypes Associated With the Presence and Absence of stx Genes, Mo Jia,Ifigenia Geornaras,Jennifer Nicole Martin,Keith Belk,Hua Yang

Effects of dietary tallow containing trace amounts of ractopamine on beef cattle performance and tissue residue levels and the effect of withdrawal time on ractopamine residues in the gastrointestinal-tract digesta, Haley Elizabeth Davis,Ashley Marie Budde,Ifigenia Geornaras,Valerie Alissa Lindstrom,Jacqueline Michelle Chaparro,Hua Yang,H. Russell Cross,Kerri B. Gehring,Keith Belk,Terry E Engle,Jessica E Prenni

Effects of dietary tallow containing trace amounts of ractopamine on beef cattle performance and tissue residue levels and the effect of withdrawal time on ractopamine residues in the gastrointestinal tract digesta, Haley Elizabeth Davis,Ashley Marie Budde,Gina Geornaras,Valerie Alissa Lindstrom,Jacqueline Michelle Chaparro,Hua Yang,H Russell Cross,Kerri B Gehring,Keith Belk,Terry E Engle,Jessica E Prenni

Comparative whole genome analysis of Escherichia coli O157:H7 isolates from feedlot cattle to identify genotypes associated with the presence and absence of stx genes, Colorado State University , Mo Jia,Gina Geornaras,Jennifer Nicole Martin,Keith Belk,Hua Yang

Evaluation of GENE-UP® New Markers EHEC for detection of Shiga toxin-producing Escherichia coli in MicroTally sheets collected from beef carcasses, Tianqing Liu,Joseph M Bosilevac,Tommy Wheeler,Terrance Arthur,Mo Jia,Ifigenia Geornaras,Vikrant Dutta,Keith E Belk,Hua Yang

Comparison of the resistome and microbiome of conventional and natural ground beef products, K.M. Thomas,Margaret Dorothy Weinroth,Enrique Doster,J. Parker,A. Vikram,Tori O Arthur,J. Schmidt,Jess Lynne Metcalf,M. Nair,R. Delmore,Hua Yang,T. Wheeler,P.S. Morley,K.E. Belk

Metagenomic characterization of the microbiome and resistome in ground beef, Enrique Doster,K.M. Thomas,Margaret Dorothy Weinroth,J. Parker,A. Vikram,Tori O Arthur,J. Schmidt,Jess Lynne Metcalf,M. Nair,R. Delmore,Hua Yang,T. Wheeler,K.E. Belk,P.S. Morley

Sequence-specific removal of STECs via CRISPR-Cas9 system, Mo Jia,Hua Yang,Gina Geornaras,Keith Belk

A comparison of the prevalence of antibiotic resistant bacteria found in ground beef from conventionally and naturally raised cattle, K.M. Thomas,Margaret Dorothy Weinroth,A. Vikram,J. Schmidt,Tori O Arthur,T. Wheeler,J.K. Parker,Jess Lynne Metcalf,Dale Ray Woerner,R. Delmore,Hua Yang,P.S. Morley,K.E. Belk

Influence of Storage Temperature, Moisture Content, and Physical Impurities on the Distribution and Survival of Salmonella enterica in Poultry Fat Intended for Pet Food Use, Rinara Cely Kiel,Jennifer Nicole Martin,Dale Ray Woerner,Rachel Lynn Murphy,Gina Geornaras,Jennifer Rose Levey,Hua Yang,Bob J Delmore,Keith Belk

Sequence-Specific Removal of Shiga Toxin-Producing Escherichia coli Using the CRISPR-Cas9 System., HUA YANG,Mo Jia,Ifigenia Geornaras,Keith Belk

Sequence-specific removal of shiga toxin-producing Escherichia coli using the CRISPR-Cas9 system, Mo Jia,I. Geornaras,K.E. Belk,Hua Yang

The characterization of retail ground beef microbiome, K.M. Thomas,Margaret Dorothy Weinroth,Enrique Doster,K.L. Huebner,J.K. Parker,Jess Lynne Metcalf,Dale Ray Woerner,R. Delmore,Hua Yang,Tori O Arthur,J. Schmidt,T. Wheeler,P.S. Morley,K.E. Belk

EXPAND THE CAPABILITIES OF A CRISPR-CAS9 SYSTEM FOR SEQUENCE-SPECIFIC ELIMINATION OF FOODBORNE PATHOGENS IN BEEF PRODUCTION, HUA YANG,JIA MO,EXPAND THE CAPABILITIES OF A CRISPR-CAS9 SYSTEM FOR SEQUENCE-SPECIFIC ELIMINATION OF FOODBORNE PATHOGENS IN BEEF PRODUCTION GEORNARAS,DALE WOERNER,PAUL MORLEY,KEITH BELK

Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems, Noelle Robertson Noyes,Xiang Yang,Lyndsey M Linke,Roberta J Magnuson,Shaun R Cook,Rahat Zaheer,Hua Yang,Dale Ray Woerner,Gina Geornaras,Jessica Anne Allerton McArt,Sheryl P Gow,Jaime Ruiz,Kenneth L Jones,Christina A Boucher,Tim A McAllister,Keith Belk,Paul S Morley

Determining process lethality of escherichia coli o157:h7 and Salmonella in heat treated, rendered oil, R.L. Murphy,D.R. Woerner,I. Geornaras,J.N. Martin,Hua Yang,J.N. Sofos,R.J. Delmore,K.E. Belk

Draft genome sequence of Shiga toxin-negative Escherichia coli O157: H7 strain C1-057, isolated from feedlot cattle, Hua Yang,Brandon Carlson,Gina Geornaras,Dale Ray Woerner,John N Sofos,Keith Belk

Electrostatic antimicrobial application to beef trim and poultry parts, H.E. Davis,J.M. Adler,R.J. Delmore,I. Geornaras,J.N. Martin,D.R. Woerner,Hua Yang,K.E. Belk

Resistome diversity in cattle and the environment decreases during beef production, Noelle Robertson Noyes,Xiang Yang,Lyndsey M Linke,Roberta J Magnuson,Adam Dettenwanger,Shaun Cook,Gina Geornaras,Dale Ray Woerner,Sheryl P Gow,Tim A McAllister,Hua Yang,Jaime Ruiz,Kenneth L Jones,Christina A Boucher,Paul S Morley,Keith Belk

The effect of storage on the shelf life of two lean points of fresh ground beef displayed in 2 different packaging formats, C.J. Weissend,D.R. Woerner,J.N. Martin,Gina Geornaras,Terry E Engle,Hua Yang,R. Delmore,Keith Belk

Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within the microbiome of the beef production chain. , Noelle Robertson Noyes,Xiang Yang,Lyndsey M Linke,Roberta J Magnuson,A Dettenwanger,S Cook,Gina Geornaras,Dale Ray Woerner,S Gow,T McAllister,Hua Yang,Jaime G Ruiz,K Jones,Christina Anne Boucher,Paul S Morley,Keith Belk

Cell wall targeted in planta iron accumulation enhances biomass conversion and seed iron concentration in Arabidopsis and rice., Hua Yang,H Wei,G Ma,Mauricio S Antunes,S Vogt,James M Cox,Xuan Zhang,Xiaoming Liu,L Bu,S C Gleber,N C Carpita,L Makowski,M E Himmel,M P Tucker,M C McCann,A S Murphy,W A Peer

Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within their microbiome in beef production chain., Xiang Yang,Noelle Robertson Noyes,E Doster,Jennifer Nicole Martin,Lyndsey M Linke,Roberta J Magnuson,Hua Yang,Gina Geornaras,Dale Ray Woerner,Kevin Jones,Jaime G Ruiz,Christina Anne Boucher,Paul S Morley,Keith Belk

Microbiome-resistome dynamics in beef production, Noyes N.R.,Xiang Yang,L.M. Linke,R.J. Magnuson,A.T. Dettenwanger,C.A. Boucher,I. Geornaras,Hua Yang,D.R. Woerner,K.L. Jones,P.S. Morley,K.E. Belk

Shotgun metagenomic sequencing reveals lack of antimicrobial resistance in beef, Noyes N.R.,Xiang Yang,L.M. Linke,R.J. Magnuson,A.T. Dettenwanger,C.A. Boucher,I. Geornaras,Hua Yang,D.R. Woerner,K.L. Jones,P.S. Morley,K.E. Belk

The pre-retail beef resistome accessed using shotgun metaenomics, Noyes N.R.,Xiang Yang,L.M. Linke,R.J. Magnuson,A.T. Dettenwanger,C.A. Boucher,I. Geornaras,Hua Yang,D.R. Woerner,K.L. Jones,P.S. Morley,K.E. Belk

The pre-retail beef resistome accessed using shotgun metagenomics, Noyes N. R.,Xiang Yang,L.M. Linke,R.J. Magnuson,A.T. Dettenwanger,C.A. Boucher,I. Geornaras,Hua Yang,D.R. Woerner,K.L. Jones,P.S. Morley,K.E. Belk

Use of metagenomic high-throughput sequencing technology and robust bioinformatics to detect foodborne pathogens of cattle, their environments, and beef products, Xiang Yang,N.R. Noyes,L.M. Linke,R.J. Magnuson,A.T. Dettenwanger,C.A. Boucher,I. Geornaras,Hua Yang,D.R. Woerner,K.L. Jones,P.S. Morley,K.E. Belk

Use of metagenomic high-throughput sequencing to understand antimicrobial resistance and for pathogen detection in beef production, Xiang Yang,N.R. Noyes,Enrique Doster,L.M. Linke,R.J. Magnuson,A.T. Dettenwanger,C.A. Boucher,I. Geornaras,Hua Yang,D.R. Woerner,K.L. Jones,P.S. Morley,K.E. Belk

Using metagenomics to unlock the ecology of antimicrobial resistance in cattle production systems, Noyes N. R.,Y. Xiang,J.A. McArt,L.M. Linke,R.J. Magnuson,Hua Yang,A. Dettenwanger,K. Jones,Christina Anne Boucher,K.E. Belk,P.S. Morley

Use of metagenomic high-throughput sequencing technology and robust bioinformatics to assess the microbiome of cattle, their environments, and beef products to determine the degree of antimicrobial resistance, Xiang Y.,N.R. Noyes,L.M. Linke,R.J. Magnuson,A.T. Dettenwanger,C.A. Boucher,I. Geornaras,Hua Yang,D.R. Woerner,K.L. Jones,P.S. Morley,K.E. Belk

Using Metagenomics to Understand the Ecology of Antimicrobial Resistance in Beef Feedlot Production Systems, Noyes N.R.,Y. Xiang,L.M. Linke,R.J. Magnuson,I. Geornaras,Hua Yang,D.R. Woerner,A. Dettenwanger,K. Jones,Christina Anne Boucher,K.E. Belk,P.S. Morley

Using metagenomics to unlock the ecology of antimicrobial resistance in cattle production systems, Noyes N. R.,Xiang Y,Jessica Anne Allerton McArt,L.M. Linke,R.J. Magnuson,Hua Yang,A. Dettenwanger,K.L. Jones,Christina Anne Boucher,K.E. Belk,P.S. Morley

The meat industry: do we think and behave globally or locally?, Keith Belk,Dale Ray Woerner,Bob J Delmore,Joseph Daryl Tatum,Hua Yang,John N Sofos

Lactic acid resistance of Shiga toxin-producing Escherichia coli and multidrug-resistant and susceptible Salmonella Typhimurium and Salmonella Newport in meat homogenate, Aliyar Fouladkhah,Gina Geornaras,Hua Yang,John N Sofos

Purified protein derivatives of tuberculin--past, present, and future., Hua Yang,Nicole Ann Kruh-Garcia,Karen Marie Dobos

Autophagy protects against active tuberculosis by suppressing bacterial burden and inflammation., E F Castillo,A Dekonenko,J Arko-Mensah,M A Mandell,N Dupont,S Jiang,M Delgado-Vargas,G S Timmins,D Bhattacharya,Hua Yang,J Hutt,C R Lyons,Karen Marie Dobos,V Deretic

Efficacy of chemical interventions against Escherichia coli O157:H7 and multidrug-resistant and antibiotic-susceptible Salmonella on inoculated beef trimmings., Gina Geornaras,Hua Yang,G Moschonas,M C Nunnelly,Keith Belk,K K Nightingale,Dale Ray Woerner,Gary C Smith,John N Sofos

Sensitivity of Shiga toxin-producing Escherichia coli, multidrug-resistant Salmonella, and antibiotic-susceptible Salmonella to lactic acid on inoculated beef trimmings., A Fouladkhah,Gina Geornaras,Hua Yang,Keith Belk,K K Nightingale,Dale Ray Woerner,Gary C Smith,John N Sofos

Comparison of decontamination efficacy of antimicrobial treatments for beef trimmings against Escherichia coli O157:H7 and 6 non-O157 Shiga toxin-producing E. coli serogroups., Gina Geornaras,Hua Yang,S Manios,N Andritsos,Keith Belk,K K Nightingale,Dale Ray Woerner,Gary C Smith,John N Sofos

Deciphering the proteome of the in vivo diagnostic reagent "purified protein derivative" from Mycobacterium tuberculosis., Y S Cho,Karen Marie Dobos,J Prenni,Hua Yang,Ann Marie Hess,I Rosenkrands,P Andersen,S W Ryoo,G H Bai,M J Brennan,Angelo A Izzo,H Bielefeldt-Ohmann,John T Belisle

Deciphering the proteome of the in vivo diagnostic reagent "purified protein derivative" from Mycobacterium tuberculosis., Y S Cho,Karen Marie Dobos,J Prenni,Hua Yang,Ann Marie Hess,I Rosenkrands,P Andersen,S W Ryoo,G H Bai,M J Brennan,Angelo A Izzo,H Bielefeldt-Ohmann,John T Belisle

Three protein-cocktails mediate DTH responses indistinguishable from PPD in the guinea pig model of Mycobacterium, Hua Yang,JoLynn M Troudt,Ajay Grover,Kimberly A Arnett,Megan C Lucas,Y. Cho,H. Bielefeldt-Ohmann,Jennifer L Taylor,Angelo A Izzo,Karen Marie Dobos

Three protein cocktails mediate delayed-type hypersensitivity responses indistinguishable from that elicited by purified protein derivative in the guinea pig model of Mycobacterium tuberculosis infection., Hua Yang,JoLynn M Troudt,Ajay Grover,Kimberly A Arnett,Megan C Lucas,Y S Cho,H Bielefeldt-Ohmann,Jennifer Lynn McLean,Angelo A Izzo,Karen Marie Dobos

Characterization and transferability of class 1 integrons in commensal bacteria isolated from farm and nonfarm environments., Hua Yang,O A Byelashov,Gina Geornaras,Lawrence Goodridge,K K Nightingale,Keith Belk,Gary C Smith,John N Sofos

Presence of antibiotic-resistant commensal bacteria in samples from agricultural, city, and national park environments evaluated by standard culture and real-time PCR methods., Hua Yang,O A Byelashov,Gina Geornaras,Lawrence Goodridge,K K Nightingale,Keith Belk,Gary C Smith,John N Sofos

Immunoproteomic identification of human T cell antigens of Mycobacterium tuberculosis that differentiate healthy contacts from tuberculosis patients., A Deenadayalan,D Heaslip,A A Rajendiran,B V Velayudham,S Frederick,Hua Yang,Karen Marie Dobos,John T Belisle,A Raja

Prevalence of potentially antibiotic-resistant bacteria carrying class 1 integrons in water and fecal samples from farm, urban, and natural environments, O.A. Byelashov,Hua Yang,K.E. Belk,G.C. Smith,Lawrence Goodridge,K.K. Nightingale,J.N. Sofos

Screening for Antibiotic-Resistance Genes and Class 1 Integrons in Commensal Bacteria in Agricultural and Other Environments and Their Potential Transfer to Pathogenic Bacteria, Hua Yang,O.A. Byelashov,I. Geornaras,Lawrence Goodridge,K.K. Nightingale,K.E. Belk,G.C. Smith,J.N. Sofos